Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0369
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    29   0.50 
SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces...    28   1.2  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    25   6.2  

>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 458 SIVNAISNSNFLDVSNFTIPAKHQWAYF*DSESW 559
           ++  ++ + NF ++ N T P +H  +YF   + W
Sbjct: 306 NVAESLVSENFANIGNSTFPTRHVLSYFPQVKHW 339


>SPBP22H7.06 |||nicotinamide riboside kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -3

Query: 506 NWKHRENLNLKWHLQLKQFSKRHKTLGTHYVN*EYTRSIFFSIQIEYQNLIE 351
           +W  +E+LNL   L+   + + H  L TH  N E  +++     IEY ++I+
Sbjct: 55  DWDCQESLNLDAFLENLHYIRDHGVLPTHLRNRE-NKNVAPEALIEYADIIK 105


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 587 FLGAATLKRPRTLNLKNT 534
           F+  +T+KRP  +NLK T
Sbjct: 235 FMSHSTIKRPEAINLKQT 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,967,617
Number of Sequences: 5004
Number of extensions: 35020
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)