Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0369
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58...    29   2.7  

>05_01_0088 +
           581619-581854,581890-582035,583143-583263,583593-583773,
           583842-584015,584161-584288,584370-584488,584559-584640,
           584726-584864,585047-585201,585275-585572,585748-585876,
           585952-586134,586263-586322,586396-586524,586600-586782,
           586869-586913,586999-587088,587229-587315,587397-587468,
           587813-587887
          Length = 943

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = +3

Query: 93  RCFQSNHIAQKSKCSEVECHQHK 161
           RCF++++ A+K KCSE++  ++K
Sbjct: 814 RCFKTSNKAKKGKCSEMKTQRNK 836


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,114,327
Number of Sequences: 37544
Number of extensions: 170515
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)