Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0369
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)                         29   3.7  
SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 28   4.9  
SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)                 28   4.9  
SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)                  28   4.9  
SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)                 28   4.9  
SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)              28   4.9  
SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)              28   4.9  
SB_4392| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-29)                  28   4.9  

>SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)
          Length = 340

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 428 GTHYVN*EYTRSIFFSIQIEYQNLIEI-ISFSTVNTYLPVTRCSKLFFLN*H 276
           G HY++  + R  FF+++I   +++ I  S    + Y   TRC+ LF L  H
Sbjct: 235 GAHYLHCAFIRCTFFALRIHPVHILGIAYSPGAQSLYCAFTRCT-LFVLRIH 285


>SB_38861| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 432

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 152 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 184


>SB_14979| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-32)
          Length = 271

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 214 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 246


>SB_43831| Best HMM Match : 7tm_1 (HMM E-Value=0.0025)
          Length = 276

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 159 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 191


>SB_29529| Best HMM Match : 7tm_1 (HMM E-Value=3.7e-23)
          Length = 269

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 152 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 184


>SB_4394| Best HMM Match : 7tm_1 (HMM E-Value=1.69978e-42)
          Length = 331

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 214 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 246


>SB_4393| Best HMM Match : 7tm_1 (HMM E-Value=6.40393e-43)
          Length = 521

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 214 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 246


>SB_4392| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-29)
          Length = 505

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 204 VRKQS*DLKRVSVEICADDIQLRYTLIFVLCDY 106
           VRK    + R    I A+DI++  TL+ ++C Y
Sbjct: 206 VRKHKASITRSRTSISAEDIKITKTLVAIVCAY 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,882,747
Number of Sequences: 59808
Number of extensions: 228800
Number of successful extensions: 401
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)