Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0367
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   5.3  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    21   9.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.3  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 VNILHAFSSFVCLYQLSNIKLVLESS 343
           VNI+H F      Y+ SNI LV+ ++
Sbjct: 90  VNIVHVFRKRRVNYKDSNIGLVVANA 115


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 516 YLTMFCSNFIDVL 478
           Y+T FCS FI V+
Sbjct: 49  YVTFFCSLFIVVI 61


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -2

Query: 549 FYKFIVMF**RYLTMFCSNFIDVLKIFSKVLDAFFIHF 436
           FY   + F    L + CS +  V  +F      F +HF
Sbjct: 59  FYCVSITFNVHLLFLLCSGYFTVHLLFYCPFIIFTVHF 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,657
Number of Sequences: 336
Number of extensions: 3111
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)