Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0367
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)                 32   0.49 
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)                       30   1.5  

>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
          Length = 462

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 517 IFDYVLFQFY*CIENILKSS*CIFHTFLLMATL**SIIKCC 395
           ++D +LF FY  +E++++   C F  F     L   I KCC
Sbjct: 76  VYDLILFCFYHSMESVIRKLFCFFAYFCPKILLISCIFKCC 116


>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
          Length = 909

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 413 SL*SCHQQKCMKNASRTFENIFNTSIKLEQNIVKYLY*NITINL*NRLSSQLIN 574
           SL  CH+++C    SR  +N  +     + NI ++    ++ N   +L S L N
Sbjct: 166 SLKECHKKRCPSTTSRLTDNSLDAHTSKDSNITEHAPVKLSKNQLRKLDSSLRN 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,473,067
Number of Sequences: 59808
Number of extensions: 301005
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)