Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0367
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    28   5.3  
U88311-5|AAB42343.1|  531|Caenorhabditis elegans Udp-glucuronosy...    28   7.0  
AC024859-15|AAK29973.1|  277|Caenorhabditis elegans Hypothetical...    27   9.3  

>Z79605-5|CAB01907.2|  316|Caenorhabditis elegans Hypothetical
           protein ZK678.6 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 548 FINLLLCFSKDI*LCSVP-ILLMY*KYSQKFLMHFSYIFADGNFIVINN 405
           F N+LL F+ DI   S+P ILL+Y    +  L   +   A G  +V+ N
Sbjct: 268 FNNMLLVFASDIFTLSLPFILLIYDSNVKSDLFRITKQSAPGTLLVLTN 316


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 207 LQETKYRKVLFYFTIQNNK**SQSLWCVCSFVFRYPNLFIIIKSGIFC 64
           + E  Y   LFY TI N+   S  L  V  +V    +LF++I  G+ C
Sbjct: 173 VDEVAYTGRLFYSTIDNSLRYSAILTGVLQWVLTASSLFLVIFFGLRC 220


>U88311-5|AAB42343.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein25 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 428 HQQKCMKNASRTFENIFNTSIKLEQNIVKY 517
           H++K  KNA +  E + N  +K ++ +VKY
Sbjct: 435 HEEKYQKNARKLSELLNNQPLKPKEQVVKY 464


>AC024859-15|AAK29973.1|  277|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.6 protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 428 HQQKCMKNASRTFENIFNTSIKLE-QNIV 511
           H+++ +K  SR F NIFN S+KL+ +N+V
Sbjct: 66  HREESLKPFSRHFPNIFN-SLKLDGENVV 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,109,458
Number of Sequences: 27780
Number of extensions: 264210
Number of successful extensions: 502
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)