Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0366
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    28   0.72 
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    25   3.9  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   6.7  

>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -3

Query: 96  LQVLLLLICEGXSQDNADDEHDKSLHDALLVP 1
           +QVL+L+     S+D   D + KSL+++LL P
Sbjct: 411 VQVLMLIFQASASRDFISDRYYKSLYESLLDP 442


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 278 HFSQSDVLLNXPSLVISCDLISIHRAYFFNGSFSVL 171
           HFS++ +L   P+L++ C    + R +  + S S++
Sbjct: 217 HFSEAHILEKFPNLLLHCFRGYVERMFIDSMSMSII 252


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 245 PSLVISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCS 135
           P +V+  DL++  +  + +    VL + +FSLF   S
Sbjct: 525 PCIVLLLDLLNSQKIIYLDDERVVLLNKIFSLFPRSS 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,991
Number of Sequences: 5004
Number of extensions: 22615
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)