Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0366
         (437 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z81097-12|CAD56590.1|  457|Caenorhabditis elegans Hypothetical p...    27   4.5  
Z81097-11|CAB03170.2|  485|Caenorhabditis elegans Hypothetical p...    27   4.5  
Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity...    27   6.0  

>AF000262-9|AAN60529.1|  820|Caenorhabditis elegans Hypothetical
           protein C48E7.8 protein.
          Length = 820

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = -1

Query: 236 VISCDLISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFVXERQSALCFFKFSFCSSVRA*A 57
           ++S   +     Y F  S   +K  + +LF  CSS +V    S  C F   F  ++R+ A
Sbjct: 309 ILSAFSVRSSLTYLFRNSTRDVK--LVNLFRVCSSFWVIF--SHTCLFSLHFTDTIRSVA 364

Query: 56  KTTQTTNTIKVFMMHSS 6
           +  ++    + FMM+SS
Sbjct: 365 RKGESVVGWRNFMMNSS 381


>Z81097-12|CAD56590.1|  457|Caenorhabditis elegans Hypothetical
           protein K07A1.9b protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 70  TDEQKENLKKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 249
           +++ K+NLK H         AD  ++ K +  + K E +  +K     +++++   KD  
Sbjct: 129 SEQSKKNLKSHEVSTKKMKDADRPVLTKKEIRNKKFEEKCRQKNLDPDVVRTERRQKDAA 188

Query: 250 FKRT 261
            +RT
Sbjct: 189 RQRT 192


>Z81097-11|CAB03170.2|  485|Caenorhabditis elegans Hypothetical
           protein K07A1.9a protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 70  TDEQKENLKKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 249
           +++ K+NLK H         AD  ++ K +  + K E +  +K     +++++   KD  
Sbjct: 157 SEQSKKNLKSHEVSTKKMKDADRPVLTKKEIRNKKFEEKCRQKNLDPDVVRTERRQKDAA 216

Query: 250 FKRT 261
            +RT
Sbjct: 217 RQRT 220


>Z81049-2|CAB02847.2|  576|Caenorhabditis elegans Hypothetical
           protein C48D1.3 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 244 GKFKRTSLWLKCLML 288
           G FK TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242


>AB030946-1|BAA90483.1|  576|Caenorhabditis elegans high-affinity
           choline transporterCHO-1 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 244 GKFKRTSLWLKCLML 288
           G FK TSLW+ C++L
Sbjct: 228 GGFKETSLWIDCMLL 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,876,429
Number of Sequences: 27780
Number of extensions: 129993
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)