Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0366
         (437 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr...    32   0.15 
At1g77270.1 68414.m08999 expressed protein                             29   1.8  
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica...    27   5.5  

>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
           protein precursor - Plasmodium falciparum, PIR2:A54514
          Length = 504

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +1

Query: 73  DEQKENLKKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGK 249
           D  K  +K+H   CL+  + DE   N L+T + K +  P+K+ A   L K     KDGK
Sbjct: 77  DVHKSFVKQHLVQCLAGAENDETSENSLET-EKKDDVTPVKEAA--ELSKEHTTKKDGK 132


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 94  KKHRADCLSXTKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQ---LMTKDGKFKRTS 264
           KK +   ++ T   ++++      D  T+    K  +LC  + +    L+ +DGK KRT+
Sbjct: 174 KKPKKSVVAKTIVWQEIIEIESATDTDTDEVGGKTLSLCGKVDASGDDLLARDGKTKRTN 233

Query: 265 LWLKCL 282
           L + C+
Sbjct: 234 LQIVCV 239


>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
            domain-containing protein similar to transcriptional
            activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
            profiles PF00271: Helicase conserved C-terminal domain,
            PF00176: SNF2 family N-terminal domain
          Length = 2055

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 109  DCLSXTKADEQLV--NKLK-TGDFKTENEPLKKYALCMLIKSQLMTKDGKFKRTSLW 270
            D L  +K  + +V  N+LK T   KT     KK+   M IK  LM K  K K+ +LW
Sbjct: 1610 DELEPSKPSDSMVVDNELKLTNRGKTVG---KKFITSMPIKRVLMIKPEKLKKGNLW 1663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,353,935
Number of Sequences: 28952
Number of extensions: 117927
Number of successful extensions: 250
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)