Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0363
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    72   8e-14
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.7  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 36/80 (45%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
 Frame = +1

Query: 25  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 198
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 199 MPKLKAFQKIQIRLVRELER 258
            P LKAF K Q RL RELE+
Sbjct: 66  QPLLKAFHKCQARLTRELEK 85



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 33/52 (63%), Positives = 40/52 (76%)
 Frame = +3

Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFP 410
           KKF+ +HV+F   R ILPKP  K+RV   QKRPRSRTLT+ +NAILED+ FP
Sbjct: 85  KKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFP 134


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 1   RHEVKMSTKIIKASGAEADSFETSISQALVELETN 105
           R +      I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 23  RFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,374
Number of Sequences: 5004
Number of extensions: 31988
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)