Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0363
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 75 4e-14
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 60 1e-09
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 38 0.005
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.8
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.8
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.8
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 74.9 bits (176), Expect = 4e-14
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KAF+KI +RLVRELE+
Sbjct: 67 YRLRKAFKKIHVRLVRELEK 86
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/53 (47%), Positives = 34/53 (64%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK VV R I+ P + V +RPR+RTLT+ ++ ILED+ +PA
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPA 134
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = +1
Query: 79 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 252
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 253 ER 258
E+
Sbjct: 98 EK 99
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK VV R I+ P + V RPR+RTLT+ ++ ILED+ +PA
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPA 147
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDL 401
KKFSGK VVF R I+ +P +K + PR+RTL + ++ ILED+
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDV 115
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +1
Query: 133 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELER 258
+Y+ ++ N K ++I+V KAF+KI +RLV+ELE+
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEK 71
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 34 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 210
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 211 KAFQKI 228
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 85 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 219
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,870
Number of Sequences: 37544
Number of extensions: 218410
Number of successful extensions: 483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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