Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0363
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...    96   2e-20
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = +1

Query: 25  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 204
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 205 KLKAFQKIQIRLVRELER 258
           +LKAF KI   LVRELE+
Sbjct: 67  QLKAFHKIHPALVRELEK 84



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
 Frame = +3

Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVA-NKQKRPRSRTLTSXYNAILEDLXFPA 413
           KKF G+ ++    R ILPKP   ++    KQKRPRSRTLT+ ++A L++L +PA
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPA 137


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 89  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN*RPFRRSRSGLS-VSSKEVQ 265
           S+SK T      F SF  Q ++K  YT  S SSS  R     P  R  +G S +S  ++Q
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSRA----PTTRLTAGASPISDVDLQ 431


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 10  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 180
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 181 I 183
           +
Sbjct: 302 V 302


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 111 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 25
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,752,747
Number of Sequences: 27780
Number of extensions: 183498
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)