Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0363
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 77 9e-15
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 77 9e-15
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 73 2e-13
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 68 6e-12
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 68 6e-12
At3g06180.1 68416.m00710 expressed protein 28 5.6
At5g48830.1 68418.m06041 expressed protein 27 7.4
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 9.7
At2g10560.1 68415.m01113 hypothetical protein 27 9.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 77.0 bits (181), Expect = 9e-15
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KAF+KI +RLVRELE+
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK V+F R I+ P + V +RPR+RTLTS + A+LED+ +PA
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPA 134
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 77.0 bits (181), Expect = 9e-15
Identities = 38/80 (47%), Positives = 58/80 (72%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KAF+KI +RLVRELE+
Sbjct: 67 FRLRKAFRKIHLRLVRELEK 86
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK V+F R I+ P + V +RPR+RTLTS + A+LED+ +PA
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPA 134
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 198
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KAF+KI RLVRELE+
Sbjct: 67 FRLRKAFRKIHPRLVRELEK 86
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK V+F R I+ P V +RPR+RTLTS + A+LED+ FPA
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPA 134
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 198
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KA++KI +RLVRELE+
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK V+ R I+ +P K A KRPR+RTLTS + AIL+D+ PA
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPA 134
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 67.7 bits (158), Expect = 6e-12
Identities = 32/80 (40%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 198
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 199 MPKLKAFQKIQIRLVRELER 258
KA++KI +RLVRELE+
Sbjct: 67 YRLRKAYRKIHVRLVRELEK 86
Score = 48.0 bits (109), Expect = 5e-06
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3
Query: 255 KKFSGKHVVFXGDRXILPKPSHKTRVANKQKRPRSRTLTSXYNAILEDLXFPA 413
KKFSGK V+ R I+ +P K A KRPR+RTLTS + AIL+D+ PA
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPA 134
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = -3
Query: 134 SSRSWALRSELVSSSTSACEIEVSKESASAPLALMIFVLILTS 6
+SRS + S SSS+S+ + + K S SA L L+I +L+L S
Sbjct: 24 ASRSASNHSSSSSSSSSS--LHLCKHSPSATLDLLILILVLFS 64
>At5g48830.1 68418.m06041 expressed protein
Length = 511
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 292 SPXKTTCLPLNFFRAHGQA 236
SP K C L+FFR HG A
Sbjct: 299 SPGKAFCYDLSFFRTHGVA 317
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 92 NSKPTPTSKPNFGSF 136
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At2g10560.1 68415.m01113 hypothetical protein
Length = 278
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = +1
Query: 7 EVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSII 186
E+K +IK + A+ S + + E + + + Q E+ + + KE KS +
Sbjct: 133 EIKRLPSVIKDNKADMGSQKQGGKNKYEQPERSKESEEQGEEVVVCRGKESCREYIKSFL 192
Query: 187 IYVPMPKLKAFQK 225
+P+ ++KA K
Sbjct: 193 AAIPIQQVKADMK 205
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,932
Number of Sequences: 28952
Number of extensions: 174443
Number of successful extensions: 443
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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