Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0356
         (605 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    27   0.12 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    27   0.12 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    27   0.12 
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    24   1.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   2.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   6.1  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   6.1  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   6.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   8.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   8.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   8.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 187 DQHFKGSRSEQEKLLKASSTLYMETFHFTQQKSKFMNCI 303
           ++H +  R   EKL +A  T+ +E  +F Q++ KF+  I
Sbjct: 469 NEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHI 507


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = -1

Query: 512 LFATSVLRTFNESSIPVTANY----SVIQPRAIYIPHTIFGIFPRIVFYKTK----STRC 357
           L+ TS +  FNESS  V  NY    S++    I     I  +   IV +KTK    ST  
Sbjct: 46  LYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNI 105

Query: 356 FLV 348
           FLV
Sbjct: 106 FLV 108


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
 Frame = -1

Query: 512 LFATSVLRTFNESSIPVTANY----SVIQPRAIYIPHTIFGIFPRIVFYKTK----STRC 357
           L+ TS +  FNESS  V  NY    S++    I     I  +   IV +KTK    ST  
Sbjct: 46  LYNTSSVSNFNESSSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVPIVIFKTKDMRNSTNI 105

Query: 356 FLV 348
           FLV
Sbjct: 106 FLV 108


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 413 YEVYKWHEAG*PNNSL*LG 469
           Y+V  W + G PNN L LG
Sbjct: 270 YQVRYWLQKGAPNNKLILG 288


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 420 YINGTRLDDRIIRCDWDAGFIEG 488
           Y+    +D RII CD    FI G
Sbjct: 252 YVTRHLIDGRIIGCDQRISFIAG 274


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = -1

Query: 485 FNESSIPVTANYSVIQPRAIYIPHTI 408
           F   S+P    Y    P+ +Y P  +
Sbjct: 254 FTAESLPDLTKYGAYSPKKVYAPEEV 279


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 385 YSTKQNPQGVFLYLSSPIITLLISPHR 305
           Y+   N    F ++ SPI    + PHR
Sbjct: 78  YTKSANTIRSFTHVESPIDEKFVHPHR 104


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 347 IQENTLWILFCRILCAGRCRKLYEVYKWHEAG*PNNSL*LGCWIH 481
           + + + +IL   I+ A  CR  +   +W  AG  +  +    +IH
Sbjct: 13  LDKKSKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 57


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 347 IQENTLWILFCRILCAGRCRKLYEVYKWHEAG*PNNSL*LGCWIH 481
           + + + +IL   I+ A  CR  +   +W  AG  +  +    +IH
Sbjct: 13  LDKKSKYILLMDIVAADDCRYKFHNSRWMVAGKADPEMPKRMYIH 57


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 569 PXRHAHXHSQFDIHL*PGLLFATSVLRTFNESSIPVTANYSVIQPRAIYIPH 414
           P  H+H        + P +L  T  +     +  PVT++ +++Q  A   P+
Sbjct: 87  PQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 569 PXRHAHXHSQFDIHL*PGLLFATSVLRTFNESSIPVTANYSVIQPRAIYIPH 414
           P  H+H        + P +L  T  +     +  PVT++ +++Q  A   P+
Sbjct: 87  PQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = -1

Query: 569 PXRHAHXHSQFDIHL*PGLLFATSVLRTFNESSIPVTANYSVIQPRAIYIPH 414
           P  H+H        + P +L  T  +     +  PVT++ +++Q  A   P+
Sbjct: 87  PQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPN 138


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,976
Number of Sequences: 336
Number of extensions: 2922
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)