Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0356
(605 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 133 2e-32
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 3e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 49 6e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 43 4e-05
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 41 2e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 2e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 4e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 4e-04
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 5e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 7e-04
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 38 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 37 0.003
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 37 0.003
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 36 0.006
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.014
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 34 0.019
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.025
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 33 0.025
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.043
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 31 0.17
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.23
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 30 0.30
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.40
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 29 0.53
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.53
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.70
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 29 0.70
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 28 1.2
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 27 1.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.1
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy... 25 6.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 25 8.6
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 8.6
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 133 bits (322), Expect = 2e-32
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 2/97 (2%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLSFYTTEEQIY L+S+CG+IRR+IMG+D++ KTPCGFCFVEY+ +DA + ++YI+ T
Sbjct: 37 GNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQ--EARLEMNIE 539
LD+RIIR D D G+ EG QYGRG + R EM E
Sbjct: 97 SLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREE 133
Score = 32.7 bits (71), Expect = 0.043
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 509 TGGQVRDEYRTDYDXGRGXMEKS 577
+GGQVRDE R ++D GRG K+
Sbjct: 122 SGGQVRDEMREEFDPGRGGYAKN 144
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 50.0 bits (114), Expect = 3e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS T EE++ +L+ R G I+RV + DK GF FV YY R+ A ++G
Sbjct: 208 NLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYG 267
Query: 438 LDDRIIRCDW 467
++ I+RC++
Sbjct: 268 WNNLILRCEF 277
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/89 (26%), Positives = 44/89 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E++ ++ CG + RV + DK+ P GF ++E+ N + +NG+
Sbjct: 60 GNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNGS 118
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQEAR 521
L +R ++ + G GRG+ R
Sbjct: 119 MLHERPLKVTPKRTNVPGMSRGRGRGRGR 147
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 42.7 bits (96), Expect = 4e-05
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK----TPCGFCFVEYYAREDAENCMRY 422
G LS T + +I L+ G +R+V + + ++ P G FV + +ED + +
Sbjct: 49 GRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108
Query: 423 INGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIELTMTV-GVAXWKNHSXXNNPN 599
+NG LDDR I E P R K + + E + +V K S N N
Sbjct: 109 LNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKNGEEPETSTSVENAESAKGSSDENEAN 168
Query: 600 T 602
T
Sbjct: 169 T 169
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLSF TE+ + + CGDI+ + + D GF +V + + A+ C+ +NG
Sbjct: 371 GNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGH 429
Query: 435 RLDDRIIRCDWDAGFI-EGPQYGRG 506
+ R R D+ G + GRG
Sbjct: 430 FIAGRPCRLDFSTPRTGGGSRGGRG 454
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + EEQ+ +++ + G ++ + +D P G+ F EY+ A + +R +N
Sbjct: 10 GNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNY 69
Query: 435 RLDDRIIRCDW 467
R +R D+
Sbjct: 70 DAGTRRLRVDF 80
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL+ T+E I E++ G I + M + K + G+C++EY + A N + +N
Sbjct: 105 NLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKMNNAE 164
Query: 438 LD 443
LD
Sbjct: 165 LD 166
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 300 YSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
+S+ G +R + + K CGF FV R+ AE M +NGT +D R I DW
Sbjct: 128 FSKFGKVREIKIPT-KGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/71 (25%), Positives = 39/71 (54%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + +E+Q+ E++++ G ++ + LD + G+ F E++ E +R +N +
Sbjct: 12 GNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNS 71
Query: 435 RLDDRIIRCDW 467
L R IR ++
Sbjct: 72 ELGPRKIRVEF 82
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 39.1 bits (87), Expect = 5e-04
Identities = 20/73 (27%), Positives = 40/73 (54%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 455
TEEQ+ +L++ G ++ + + LD+ G+ +EY E A+ + N + LD+++
Sbjct: 22 TEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEKNLSLLDEKL- 80
Query: 456 RCDWDAGFIEGPQ 494
+ D F+E P+
Sbjct: 81 --EVDFAFLEPPE 91
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 7e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLSF T E++Y+L+ R G +R++ +G + G FV Y +DA ++G
Sbjct: 18 NLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR---GTAFVVYENVQDARRACEKLSGYN 74
Query: 438 LDDRII 455
DR +
Sbjct: 75 FMDRYL 80
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL++ E+ + L+ G + +V M +DK P GF +++++ +DA ++
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388
Query: 438 LDDRII 455
R++
Sbjct: 389 FQGRLL 394
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTP-----CGFCFVEYYAREDAENCMRY 422
NL+F T +E+ +++ ++ K P GF FVE+ + A M
Sbjct: 625 NLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKASAVAAMHA 684
Query: 423 INGTRLD 443
+NG LD
Sbjct: 685 MNGFVLD 691
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.7 bits (81), Expect = 0.003
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
Q + + +F N NL TE++ +L+ + G+I + + D+ K P GF FV Y
Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNY 308
Query: 387 YAREDAENCMRYIN 428
E A+ + +N
Sbjct: 309 ANHECAQKAVDELN 322
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL+ TE +Y + G+I V + K K + FVE+ EDA+ M +N +
Sbjct: 11 GNLAPSVTESLLYNAFIPFGEIISVALHR-KEKAVDRSYAFVEFDEPEDAKEAMENMNYS 69
Query: 435 RLDDRIIR 458
L DR IR
Sbjct: 70 ILCDRCIR 77
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 35.5 bits (78), Expect = 0.006
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL T+ ++EL + G + + + D+ + + GF F E+ +D E + +N
Sbjct: 16 GNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQV 75
Query: 435 RLDDRIIR 458
+L + IR
Sbjct: 76 KLFGKPIR 83
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.014
Identities = 20/75 (26%), Positives = 35/75 (46%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL F E+ I ++S G+ + + DK GF F++Y + + +
Sbjct: 36 GNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNV 95
Query: 435 RLDDRIIRCDWDAGF 479
+L DR++R D A +
Sbjct: 96 KLLDRLVRVDHVASY 110
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.9 bits (74), Expect = 0.019
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
GNL F TT+ + E + + G IRRV +M + K GF FV++ D + CM+
Sbjct: 233 GNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCK-GFGFVDF---PDIDTCMK 284
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.025
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N+ F T+E + ++ GDI V + D ++ GF +++Y A N + +NG
Sbjct: 346 NIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSK-GFGYIQYRNPISARNALEKMNGFD 404
Query: 438 LDDRIIR 458
L R +R
Sbjct: 405 LAGRNMR 411
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 33.5 bits (73), Expect = 0.025
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGF--IEGPQYGRGKQEAR 521
G F +++ E+A+ ++ +NG + R +R +W E + RGKQE R
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPAERERVERGKQEKR 327
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 32.7 bits (71), Expect = 0.043
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 428
G L + TE I ++++ G +V + ++Y G+CFVE+ + +A + M N
Sbjct: 98 GELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNN 155
Score = 31.9 bits (69), Expect = 0.075
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS + +EE++ L+ G+I V + K CG FV++ R+ AE + + G
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGK----GCG--FVQFVNRQSAEIAINQLQGY 361
Query: 435 RLDDRIIRCDW 467
L + IR W
Sbjct: 362 PLGNSRIRLSW 372
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 30.7 bits (66), Expect = 0.17
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + E+ + L+ IR VIM D+ ++ G C V + +DAE+ + + T
Sbjct: 91 NLHYQVLEKDVLSLFENFHPIR-VIMNYDRAGRSE-GSCDVYFETSQDAEDAQKTLQSTN 148
Query: 438 L 440
L
Sbjct: 149 L 149
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRV-IMGLDKYK----KTPCGF 371
+K R K ++ GNL ++EL+ G+ + ++ K K K+P F
Sbjct: 9 EKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLF 68
Query: 372 CFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
F+ + + A+N + +NG+ ++ ++
Sbjct: 69 AFITFENKCSADNAIASLNGSSFQGNTLKVEY 100
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
GNL+F EE ++ + CG I V + D GF ++++
Sbjct: 275 GNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQF 318
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.5 bits (63), Expect = 0.40
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
G F +Y E+A+ ++ +NG ++ R +R +W
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVEW 277
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/83 (21%), Positives = 33/83 (39%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
T +E + ++SR G I + DK + F+E+ +E E + +DD
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 453 IRCDWDAGFIEGPQYGRGKQEAR 521
I D+ QY ++ +
Sbjct: 315 IHVDFSQSVARYRQYYNSNRDRK 337
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.53
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
++ K K FV + G+ TEE+ +++ G + + +DK P GF FV Y
Sbjct: 240 REEQEKTAKMFVGGVPGDC----TEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY 295
Query: 387 YAREDAENCM 416
E M
Sbjct: 296 ENESAVEATM 305
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
NL E+Q+ EL GD+ + + + GFCF E+ DAE + ++G
Sbjct: 316 NLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGLDG 373
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.7 bits (61), Expect = 0.70
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 354 KTPCGFCFVEYYAREDAENCMRYINGTRLD--DRIIRCDW 467
+T F FVEY DAE+ ++G RL+ ++R +W
Sbjct: 44 RTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEW 83
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 157 NSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHFTQQKSKFMN 297
N++ +S+ DQH G+ + + +ST ++T HFT +N
Sbjct: 414 NATSNLSAIVDQHIPGALTCSQYPTSVASTQLVQTSHFTSTSLSAVN 460
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = -1
Query: 554 HXHSQFDIHL*PGLLFATSVLRTFNES-SIPVTANYSVIQPRAIY--IPHTIFGIFPRIV 384
H S +D ++ FA ++++ + +I V + ++ P + IP I G+F +
Sbjct: 260 HEESNWDDYVAVNRAFADALIKNYKTGDTIWVNDYHLLLVPNMVRERIPSAIIGLFIHVS 319
Query: 383 FYKTKSTRCF 354
F ++ RCF
Sbjct: 320 FPSSEVFRCF 329
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.1 bits (57), Expect = 2.1
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLS E+++ +S+ RR+ + K CFVE+ A M + G
Sbjct: 607 GNLSNPDQEKKLRLAFSKEKGYRRLCFKI----KGNSPMCFVEFEEVCHAAKAMEKMQGA 662
Query: 435 RLDDRI 452
LDD+I
Sbjct: 663 ALDDKI 668
>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 6.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 438 LDDRIIRCDWDAGFIEGP 491
+D+ I+ C ++AG +E P
Sbjct: 182 MDENIVHCSYEAGILEDP 199
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 8.6
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +1
Query: 67 SQNLVDSCILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASST 246
S LVD ++K Q + + N S +S+ + K RSE+ LL ST
Sbjct: 421 SHPLVDDIYNGFDVDKKHQSSSVPTLPNLTNISRVLSNKTSKSAKPKRSERTGLLSHQST 480
Query: 247 LYMETFHFTQQKSKFMNC 300
L E +QQ+ F C
Sbjct: 481 LAPEP--LSQQRDSFELC 496
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 395
N+S T EQ+ + G++ + + L+ Y T G C + + R
Sbjct: 100 NISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,036
Number of Sequences: 5004
Number of extensions: 47223
Number of successful extensions: 151
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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