Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0356
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 51 8e-07
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 50 1e-06
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 40 0.001
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 38 0.005
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.005
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.011
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.078
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 33 0.24
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 33 0.24
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.31
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.31
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.31
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 31 0.72
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 0.96
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 30 1.3
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 30 1.7
SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037) 30 1.7
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032) 29 2.9
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_472| Best HMM Match : Cas1p (HMM E-Value=0) 28 6.7
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 28 6.7
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 27 8.9
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/70 (32%), Positives = 35/70 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS T E + EL+ G I R+ + DK+ GF F+ + REDA + ++G
Sbjct: 187 NLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSGFG 246
Query: 438 LDDRIIRCDW 467
D I+ +W
Sbjct: 247 YDHLILNVEW 256
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = +3
Query: 231 KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 410
+S + GN+ + +EEQ+ E++S G + + D+ P G+ F EY +E A +
Sbjct: 22 RSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALS 81
Query: 411 CMRYINGTRLDDRIIRCD 464
MR +NG L+ R +R D
Sbjct: 82 AMRNLNGYELNGRALRVD 99
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N+ E+ I+EL+S G+I+ + + LD+ G+ VEY ++A++ + +NG
Sbjct: 299 NIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAE 358
Query: 438 LDDRIIRCDWDAGFIEGP 491
+ + I DW FI GP
Sbjct: 359 MLGQNISVDW--AFIRGP 374
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL++ TT E + +++ + GD+ + + D+ GF FV +Y + DAE+ M ++ T
Sbjct: 22 NLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATC 81
Query: 438 L 440
L
Sbjct: 82 L 82
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/58 (31%), Positives = 34/58 (58%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
N+ + +E I L+ +CG + +V + D ++ GFCFV +E+A+N ++ +NG
Sbjct: 281 NIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAIQTLNG 338
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDDRIIR 458
GF FV+Y EDA+ + +NG + +++++
Sbjct: 89 GFGFVDYNTTEDAQKAIDKLNGFTIGNKVLK 119
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL + T +++++ R G + +V + DK + G F+ + R+ A+N + +N
Sbjct: 15 GNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKK 74
Query: 435 RLDDRIIRC 461
++ R I+C
Sbjct: 75 QMFGRTIKC 83
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/80 (27%), Positives = 44/80 (55%)
Frame = +3
Query: 216 TRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAR 395
T K TK +V L N++ ++ + E++S G ++ V + D+ GF +VEY
Sbjct: 1153 TPKPTKLYVAHLTRNVN----KDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDP 1208
Query: 396 EDAENCMRYINGTRLDDRII 455
E+ E +++++G ++D + I
Sbjct: 1209 EECEKALKHMDGGQIDGQEI 1228
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRR---VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI 425
GNL +E I ++ + G+I + G + P G+CFVE+ +EDA +R +
Sbjct: 392 GNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKALRGL 451
Query: 426 NGTRLDDRIIRCDW 467
N + R + DW
Sbjct: 452 NKKIVLSRALVVDW 465
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL ++ + + G + +V + + P GF FVEY DAE +R ++G
Sbjct: 9 GNLGRNADSSELERAFEKFGRLSKVWVA-----RNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 435 RLDDRIIRCDW 467
+ DR IR ++
Sbjct: 64 NVCDRTIRVEF 74
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
G LS+ TT+E + E +S+ G++ V + +D P GF FV++ + +A+
Sbjct: 34 GGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD 84
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/68 (30%), Positives = 32/68 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+++F EE I + G I ++ + D GF FVEY E A+ + +NG
Sbjct: 107 GSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQMNGV 166
Query: 435 RLDDRIIR 458
L R I+
Sbjct: 167 LLGGRNIK 174
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 37.1 bits (82), Expect = 0.011
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L +E I+EL+ + G + V M D+ + G+ FVE+ EDA+ ++ +N
Sbjct: 18 GGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMI 77
Query: 435 RLDDRIIR 458
++ + IR
Sbjct: 78 KVYGKPIR 85
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 455
++E I +++ G++ + D+ G+ FV Y +DA +R +NG RL ++ +
Sbjct: 39 SQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTL 98
Query: 456 R 458
+
Sbjct: 99 K 99
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 34.7 bits (76), Expect = 0.059
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
L + TTE ++ E ++R G+I + LD + GF FV + EDA+N +
Sbjct: 122 LPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 34.3 bits (75), Expect = 0.078
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
NLSF +T++ I L+ + GDI + +D + G FV+Y + E C+
Sbjct: 422 NLSFDSTQKNITNLFKQFGDIAYCKVVVDHLTQHSKGSAFVKYRSAESVTQCL 474
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKY--KKTPCGFCFVEYYAREDAENCMRYING 431
NL+F TE + E +S G++ + K + GF FV++ DA + +N
Sbjct: 253 NLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEEMNA 312
Query: 432 TRLDDRIIRCDW 467
++ R + DW
Sbjct: 313 KKILGRPVAVDW 324
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 288 IYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 458
I EL+S+ G++ + ++ GF FV+Y E+AE R NG +++ IR
Sbjct: 222 IKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIR 278
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
TT+E + ++SR G I + D+ + F+E+ ED E ++ +DDR
Sbjct: 131 TTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRR 190
Query: 453 IRCDW 467
I D+
Sbjct: 191 IHVDF 195
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 32.7 bits (71), Expect = 0.24
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = +3
Query: 252 HGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
+G L E I ++S G + RV+M + + FV Y + +A N MR +NG
Sbjct: 54 NGGLMCGVDRESITRVFSLYGTLERVVMLPQR------SYSFVSYKSHNNALNAMRNLNG 107
Query: 432 TRLDD 446
LD+
Sbjct: 108 KALDE 112
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/68 (27%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL F EE + EL++ CG++ V + D+ GF +V + +++ ++ +N
Sbjct: 61 GNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALK-MNNA 119
Query: 435 RLDDRIIR 458
R IR
Sbjct: 120 EFKGRKIR 127
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 32.3 bits (70), Expect = 0.31
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 422
NL T E + +S CGDI+ + MG D K P + ++E+ + + ++Y
Sbjct: 78 NLDPEITAEMLLSFFSSCGDIKYIRMGGDDGK--PTRYAYIEFAETQAIVSALQY 130
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L F TE + ++ G + V + D G+ FV++ E A+ M +NG
Sbjct: 247 GSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGF 306
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 307 ELAGRPLK 314
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL T+E I ++++ + R M K P +CFVE+ DA+ ++
Sbjct: 374 GNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADAQEAKFRMDQR 431
Query: 435 RLDDRIIRCDW 467
+ D+ ++ +W
Sbjct: 432 TVMDKKLKVNW 442
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +3
Query: 321 RRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDA 473
R V + D K GF FV + REDA + ++ + + ++ +W A
Sbjct: 540 REVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAA 590
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 279 EEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 428
E+++ ++ G I V + +D + G+ FV Y +++DA+ C++ +N
Sbjct: 87 EDELVPVFETAGPIYEVRLMMD-FNGQNRGYAFVVYTSKDDAKRCVKTLN 135
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ ++ +I + G +R V + + P GF F + R DAE+ +R ++G
Sbjct: 7 GNIGDNASKREIEREFETFGPLRDVWVA-----RNPPGFAFCVFEDRRDAEDAVRELDGR 61
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQ 512
+ + R + +GP GR +Q
Sbjct: 62 YICGQRARVE----LAKGPSRGRPRQ 83
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.7 bits (66), Expect = 0.96
Identities = 14/60 (23%), Positives = 31/60 (51%)
Frame = +3
Query: 249 LHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 428
L L F+ + + +++S G + V + K+ GF F+E+ +++ AE+ ++ N
Sbjct: 91 LEEKLPFHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E+ +++++ + G I V + + P F FVE+ DAE+ ++ +G
Sbjct: 266 GNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--FAFVEFEDPRDAEDAVKGRDGH 323
Query: 435 RLDDRIIRCDWDAG 476
D IR ++ G
Sbjct: 324 EFDGYRIRVEFPRG 337
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L+ E+ ++ + GDI V + +D GF FVE+ ED + +N +
Sbjct: 10 GGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNES 69
Query: 435 RLDDRIIR 458
L R IR
Sbjct: 70 ELFGRTIR 77
>SB_10355| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0037)
Length = 1127
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +1
Query: 154 MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHFTQQKSKFMNCIHDAEI*EE 327
+N S E +S R+ K E K LKA T +ET H ++ K K D E+ E+
Sbjct: 467 LNLSKESASERENKLKSELEETSKRLKAEHTSELETLH-SEYKDKLRKL--DVELKEQ 521
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 294 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 443
EL+S G ++R + D ++ G V + REDA+ ++ NG LD
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRSH-GTAEVVFVRREDAQQALKQYNGVPLD 49
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/97 (24%), Positives = 46/97 (47%)
Frame = +3
Query: 213 RTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYA 392
R ++TK ++ +L N S + +I + G ++ V + + P GF F +
Sbjct: 27 RRAEMTKVYIGSLGDNAS----KREIENEFGYYGPLKDVWVA-----RNPPGFAFCIFDD 77
Query: 393 REDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGR 503
R DAE+ +R ++G + + +R + +GP GR
Sbjct: 78 RRDAEDAVRELDGRYICGQRVRVE----LAKGPSRGR 110
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +1
Query: 91 ILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHF 270
++ +I E+ E++Y+++ S+++ ++++S RD + RSEQE + + + E
Sbjct: 999 LVSMINERDEKLYEIQDSFEAQ--LLDLTSSRDNDVEILRSEQESMHQVLTERQQECETL 1056
Query: 271 TQQKSKFMNCIHDAE 315
++ + IH+ +
Sbjct: 1057 RNTTNELITSIHEKQ 1071
>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
Length = 1293
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/75 (21%), Positives = 41/75 (54%)
Frame = +1
Query: 91 ILLLIIEK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHF 270
++ +I E+ E++Y+++ S+++ ++++S RD + RSEQE + + + E
Sbjct: 947 LVSMINERDEKLYEIQDSFEAQ--LLDLTSSRDNDVEILRSEQESMHQVLTERQQECETL 1004
Query: 271 TQQKSKFMNCIHDAE 315
++ + IH+ +
Sbjct: 1005 RNTTNELITSIHEKQ 1019
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 312 GDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRCD 464
G+I V + DK GFCF+ Y + + NG +L R IR D
Sbjct: 3 GEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVD 53
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +1
Query: 109 EK*EQVYKMKRSYDSMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYME 258
EK ++ K K D + + EI S RD+ KGS S EK+L Y+E
Sbjct: 143 EKFRELMKEKGKSD-LETEQEIKSLRDEALKGS-SSTEKILSDLEKRYLE 190
>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 179 PIVTNILRDPEANKKNY*KLRQRFTWKPFILHNRRANL*TVFTMRRYKKSNNGTRQIQEN 358
P+ + RDP N + R T P ++NR +T RY +NN TR N
Sbjct: 153 PVNNSYTRDPVNNSDTRDPVNNRDTRDP--VNNRDTRYPVKYTDTRYPVNNNDTRDPVTN 210
Query: 359 T 361
T
Sbjct: 211 T 211
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/54 (18%), Positives = 27/54 (50%)
Frame = +3
Query: 279 EEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
E+++ ++ CG I + +D GF F + +++A+N ++ ++ +
Sbjct: 165 EDELIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNKEI 218
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +3
Query: 315 DIRRVIMGLDKYKKTPC--GFCFVEYYAREDAENCMRYINGTR-LDDRIIRC 461
D+ + + G + ++ G+ FVE+ DA++C+ +NG L +R I C
Sbjct: 20 DLEKFVRGYGRVREISMKLGYGFVEFDDYRDADDCVYDLNGRNLLGEREIAC 71
>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 488 TFNESSIPVTANYSVIQPR 432
T+N+ + P++A Y VI+PR
Sbjct: 466 TYNDDTSPISATYKVIEPR 484
>SB_472| Best HMM Match : Cas1p (HMM E-Value=0)
Length = 932
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 375 NKIHKVFSCICLVPLLLFLYLR 310
NK+H +SCI PLL ++YLR
Sbjct: 797 NKLHPYYSCI---PLLAYIYLR 815
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 27.9 bits (59), Expect = 6.7
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 525 LTWPPVCHV-RTADLQ*IQHPSHSELFGHPASCHLYT--SYNFRHLPAHSILQ 376
+T PPV H R L ++P+ + HP H Y S RHLP H ILQ
Sbjct: 799 VTHPPVSHTYRHTSLY--RYPTLTVT--HPPVSHTYRHKSTGIRHLPPHIILQ 847
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = -3
Query: 444 HPASCHLYT--SYNFRHLPAHSILQ-NKIHKVFSC-ICLVPLLLFLYLRIVNTVH 292
HP H Y S RHLP+H ILQ + I++ S I +P + Y + T H
Sbjct: 704 HPPVSHTYRHKSAGIRHLPSHIILQVSHIYRHTSAGISHLPSQIRRYPTLTTTHH 758
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCF 377
+L F TT +++ E + +CG++ + + ++ K+T F
Sbjct: 242 DLDFDTTVDELREYFEKCGELTGIDLLINSEKRTCAAIVF 281
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,900,567
Number of Sequences: 59808
Number of extensions: 328719
Number of successful extensions: 847
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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