Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0356
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 152 2e-37
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 53 1e-07
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 52 2e-07
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 52 2e-07
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 47 9e-06
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 44 6e-05
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 44 8e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 42 5e-04
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 42 5e-04
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 42 5e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 42 5e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 41 8e-04
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 40 0.001
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 40 0.001
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 40 0.001
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 40 0.001
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical pr... 38 0.004
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 37 0.013
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 37 0.013
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 36 0.017
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.017
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.022
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.022
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 35 0.052
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 35 0.052
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 35 0.052
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 34 0.069
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 34 0.069
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 34 0.069
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 34 0.069
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 34 0.091
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 34 0.091
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 34 0.091
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 34 0.091
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 32 0.37
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.48
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.48
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.48
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 31 0.84
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 31 0.84
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 31 0.84
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical pr... 30 1.5
M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alp... 30 1.5
AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeri... 30 1.5
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 29 1.9
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 29 1.9
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 1.9
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 29 1.9
Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 3.4
AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical... 29 3.4
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 28 4.5
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 4.5
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 5.9
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 152 bits (368), Expect = 2e-37
Identities = 63/85 (74%), Positives = 75/85 (88%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLS+YT E+Q+YEL+ R GD+RRVIMGLD++KKTPCGFCFVEYY REDAE ++ I+ T
Sbjct: 42 GNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISNT 101
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGK 509
R+DDR+IR DWDAGFIEG QYGRGK
Sbjct: 102 RMDDRVIRADWDAGFIEGRQYGRGK 126
Score = 36.7 bits (81), Expect = 0.013
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +1
Query: 151 SMNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYM 255
++++ EIS+YRDQ ++G+ +QE L+ S TLY+
Sbjct: 7 TLDNPKEISAYRDQRYQGTVRDQETALRTSCTLYV 41
Score = 34.7 bits (76), Expect = 0.052
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 512 GGQVRDEYRTDYDXGRGXMEKS 577
GGQVRDEYR DYD RG ++
Sbjct: 128 GGQVRDEYRKDYDPERGGYNRA 149
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/82 (31%), Positives = 47/82 (57%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+S+ +E+ I ++S+ G++ + M D+ P G+ F+E+ + AE +R +NG
Sbjct: 23 GNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGY 82
Query: 435 RLDDRIIRCDWDAGFIEGPQYG 500
L RI+R D AG + ++G
Sbjct: 83 ELSGRILRVDSAAGGMNMEEFG 104
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS+ TT + + R GDI V + DKY + GF FV +Y R DAE+ + +G
Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84
Query: 438 LDDRIIR 458
+D R +R
Sbjct: 85 VDGRELR 91
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 52.4 bits (120), Expect = 2e-07
Identities = 26/67 (38%), Positives = 37/67 (55%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS+ TT + + R GDI V + DKY + GF FV +Y R DAE+ + +G
Sbjct: 25 NLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKL 84
Query: 438 LDDRIIR 458
+D R +R
Sbjct: 85 VDGRELR 91
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN F TTEE++ +S G I V + D+ P GF F+E+ A+ + +NG
Sbjct: 10 GNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGA 69
Query: 435 RLDDRIIR 458
+ R +R
Sbjct: 70 EFNGRPLR 77
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/70 (27%), Positives = 38/70 (54%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL E+++ +L+ + G + R+ + DK P GF FV + +R+DA + +N R
Sbjct: 182 NLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIR 241
Query: 438 LDDRIIRCDW 467
+ +++ +W
Sbjct: 242 MYHMVLKVEW 251
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN F TTE+ + +S+ G++ V + D+ P GF FVE+ A+ + NG
Sbjct: 9 GNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGV 68
Query: 435 RLDDRIIR 458
+ R +R
Sbjct: 69 DFNGRALR 76
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 44.0 bits (99), Expect = 8e-05
Identities = 21/70 (30%), Positives = 38/70 (54%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E+I + + CG + RV + D++ P GF +VE+ +E +N + + +
Sbjct: 83 GNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALA-MTDS 141
Query: 435 RLDDRIIRCD 464
L R I+ D
Sbjct: 142 LLRGRQIKVD 151
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + TEE+I ++ G + V + D+ P GF FVE+ A+ + +NG
Sbjct: 11 GNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGV 70
Query: 435 RLDDRIIRCDW 467
+ R +R ++
Sbjct: 71 AFNGRNLRVNY 81
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/84 (33%), Positives = 43/84 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T +++ E++ R G IR+V + + P GF FVEY DAE+ +R ++G+
Sbjct: 8 GGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRG 506
R+ R + G G GRG
Sbjct: 63 RICGVRARVELSTGQRRGGG-GRG 85
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/84 (33%), Positives = 43/84 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T +++ E++ R G IR+V + + P GF FVEY DAE+ +R ++G+
Sbjct: 8 GGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRG 506
R+ R + G G GRG
Sbjct: 63 RICGVRARVELSTGQRRGGG-GRG 85
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 41.5 bits (93), Expect = 5e-04
Identities = 28/84 (33%), Positives = 43/84 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T +++ E++ R G IR+V + + P GF FVEY DAE+ +R ++G+
Sbjct: 8 GGLPSDATSQELEEIFDRFGRIRKVWVA-----RRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRG 506
R+ R + G G GRG
Sbjct: 63 RICGVRARVELSTGQRRGGG-GRG 85
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
Q++++ T + G+LS +++ E + GD+ + D G+ FV Y
Sbjct: 11 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 70
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDW 467
RE+AE + +NG L R IR +W
Sbjct: 71 PKREEAERAIEQMNGQWLGRRTIRTNW 97
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
Q++++ T + G+LS +++ E + GD+ + D G+ FV Y
Sbjct: 21 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 80
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDW 467
RE+AE + +NG L R IR +W
Sbjct: 81 PKREEAERAIEQMNGQWLGRRTIRTNW 107
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
Q++++ T + G+LS +++ E + GD+ + D G+ FV Y
Sbjct: 124 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 183
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDW 467
RE+AE + +NG L R IR +W
Sbjct: 184 PKREEAERAIEQMNGQWLGRRTIRTNW 210
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/87 (27%), Positives = 41/87 (47%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
Q++++ T + G+LS +++ E + GD+ + D G+ FV Y
Sbjct: 92 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSY 151
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDW 467
RE+AE + +NG L R IR +W
Sbjct: 152 PKREEAERAIEQMNGQWLGRRTIRTNW 178
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLD-KYKKTPCGFCFVEYYAREDAENCMRYINGT 434
NL F T +E + L S G +++ K KT GF F+++ + DAE + N
Sbjct: 101 NLPFKTKKEDLQNLCSNIGKFVEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGREFFNTN 160
Query: 435 RLDDRIIRCDW 467
++ R + DW
Sbjct: 161 KVLGRSVAADW 171
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 40.7 bits (91), Expect = 8e-04
Identities = 23/81 (28%), Positives = 38/81 (46%)
Frame = +3
Query: 225 ITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 404
I +S N + L T+E++ L++ G+I + DK G+ FV Y EDA
Sbjct: 37 IGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDA 96
Query: 405 ENCMRYINGTRLDDRIIRCDW 467
+ NG RL ++ I+ +
Sbjct: 97 LRAVSSFNGLRLQNKTIKVSY 117
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ F +T E++ E + CG I R + DK+ K F ++E+ EN + +NG+
Sbjct: 66 GNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGS 124
Query: 435 RLDDRII 455
R I
Sbjct: 125 LFRSRPI 131
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
+ R++ T + G+L ++ E + + G++ + D G+ FV Y
Sbjct: 121 ENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSY 180
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDW 467
REDAE + +NG L R IR +W
Sbjct: 181 PRREDAERAIDEMNGAWLGRRTIRTNW 207
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRG 506
G+ FV++ +E A + +N + +I+RC W G RG
Sbjct: 291 GYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDSGKPSERG 337
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS YTTE+ + +++ G+I + + D+ GF F+ + EDA + T
Sbjct: 82 NLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLIEDATAARDKLCNTD 141
Query: 438 LDDRIIRCDW 467
LD IR D+
Sbjct: 142 LDGHKIRVDF 151
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N+ TE+ +++ +S G I+ + + LD+ G+ VEY +++A + N T
Sbjct: 61 NIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSNDTD 120
Query: 438 LDDRIIRCDW 467
L + ++ DW
Sbjct: 121 LLGQNVKVDW 130
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ F +T E+I E + CG I + + DK+ K F ++E+ EN + +NG+
Sbjct: 60 GNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGS 118
Query: 435 RLDDRII 455
R I
Sbjct: 119 LFRSRPI 125
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/71 (32%), Positives = 35/71 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+S TT+ + +L+S GDI V + KT + FV Y +E A + +NG
Sbjct: 242 GNISQQTTDADLRDLFSTYGDIAEV-----RIFKTQ-RYAFVRYEKKECATKAIMEMNGK 295
Query: 435 RLDDRIIRCDW 467
+ +RC W
Sbjct: 296 EMAGNQVRCSW 306
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/82 (23%), Positives = 40/82 (48%)
Frame = +3
Query: 228 TKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
T + G+LS + E + +++ G++ + D + G+ FV + +++AE
Sbjct: 131 TSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAE 190
Query: 408 NCMRYINGTRLDDRIIRCDWDA 473
N + +NG + R +R +W A
Sbjct: 191 NAIAGMNGKWIGKRAVRTNWAA 212
>Z81038-2|CAB02757.1| 454|Caenorhabditis elegans Hypothetical
protein C25A1.4 protein.
Length = 454
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL+F +++YE++ G I + +DK K+ G C ++Y +A + +NG R
Sbjct: 194 NLAFNVGTDKLYEVFGMAGKITWMDFRIDKEGKSK-GVCVIQYTHPIEAVQAVSMLNGQR 252
Query: 438 LDDR 449
L DR
Sbjct: 253 LFDR 256
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 36.7 bits (81), Expect = 0.013
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E+++ +++ + G I+ V + K + P F FVE+ DAE+ +R +G
Sbjct: 14 GNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPA-FAFVEFEDHRDAEDAVRARDGY 69
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGK 509
D R IR ++ G GP+ G+
Sbjct: 70 EFDGRRIRVEFTRGV--GPRGPSGR 92
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + +T +I E ++ CG + RV + DK+ F FVE+ E + + ++GT
Sbjct: 51 GNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLAL-VLSGT 109
Query: 435 RLDDRII 455
+R I
Sbjct: 110 MFRNRKI 116
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKK-TPCGFCFVEYYAREDAENCMRYINGT 434
NLS + + E++S G I+ V + D++ G+ +VEY EDAE +++++G
Sbjct: 139 NLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMDGG 198
Query: 435 RLDDRIIRCDWDAG 476
++D + + G
Sbjct: 199 QIDGMAVHVEMTIG 212
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.017
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E+++ +++ + G I+ V + K + P F FVE+ DAE+ +R +G
Sbjct: 14 GNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPA-FAFVEFEDHRDAEDAVRARDGY 69
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGK 509
D R IR ++ G GP+ G+
Sbjct: 70 EFDGRRIRVEFTRGV--GPRGPGGR 92
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L +E ++EL + G + V M D+ GF FVE+ EDA+ ++ +N
Sbjct: 18 GGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMI 77
Query: 435 RLDDRIIR 458
+L + I+
Sbjct: 78 KLYGKPIK 85
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 243 NALHGNLSFYTTEEQIYELYSRCGDIRRVIMGL-DKYKKTPCGFCFVEYYAREDAENCMR 419
N GNL E+ +Y+ +S G I +V + D T GF F+ + + E ++ +
Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160
Query: 420 YINGTRLDDRII 455
+NG L +R I
Sbjct: 161 AMNGQFLCNRAI 172
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L +E ++EL + G + V M D+ GF FVE+ EDA+ ++ +N
Sbjct: 28 GGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMI 87
Query: 435 RLDDRIIR 458
+L + I+
Sbjct: 88 KLYGKPIK 95
Score = 31.1 bits (67), Expect = 0.64
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 243 NALHGNLSFYTTEEQIYELYSRCGDIRRVIMGL-DKYKKTPCGFCFVEYYAREDAENCMR 419
N GNL E+ +Y+ +S G I +V + D T GF F+ + + E ++ +
Sbjct: 111 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 170
Query: 420 YINGTRLDDRII 455
+NG L +R I
Sbjct: 171 AMNGQFLCNRAI 182
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
G L+ TT++ + E YS+ G+I +I+ D K GF FV + + + + M+
Sbjct: 28 GGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM----RYINGTRLD 443
TE+ + E +++ G + + + LDK + P GF FV + + + C+ +NG R D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 444 DR 449
R
Sbjct: 186 VR 187
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
G L+ TT++ + E YS+ G+I +I+ D K GF FV + + + + M+
Sbjct: 28 GGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM----RYINGTRLD 443
TE+ + E +++ G + + + LDK + P GF FV + + + C+ +NG R D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 444 DR 449
R
Sbjct: 186 VR 187
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.052
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
G L+ TT++ + E YS+ G+I +I+ D K GF FV + + + + M+
Sbjct: 28 GGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM----RYINGTRLD 443
TE+ + E +++ G + + + LDK + P GF FV + + + C+ +NG R D
Sbjct: 126 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 185
Query: 444 DR 449
R
Sbjct: 186 VR 187
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L Y TE+Q+ EL G ++ + +D + G+ F EY + + +NG
Sbjct: 296 GGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK-GYAFAEYLDPTLTDQAIAGLNGM 354
Query: 435 RLDDR 449
+L D+
Sbjct: 355 QLGDK 359
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L Y TE+Q+ EL G ++ + +D + G+ F EY + + +NG
Sbjct: 296 GGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK-GYAFAEYLDPTLTDQAIAGLNGM 354
Query: 435 RLDDR 449
+L D+
Sbjct: 355 QLGDK 359
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L Y TE+Q+ EL G ++ + +D + G+ F EY + + +NG
Sbjct: 271 GGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK-GYAFAEYLDPTLTDQAIAGLNGM 329
Query: 435 RLDDR 449
+L D+
Sbjct: 330 QLGDK 334
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 34.3 bits (75), Expect = 0.069
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L Y TE+Q+ EL G ++ + +D + G+ F EY + + +NG
Sbjct: 274 GGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSK-GYAFAEYLDPTLTDQAIAGLNGM 332
Query: 435 RLDDR 449
+L D+
Sbjct: 333 QLGDK 337
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 33.9 bits (74), Expect = 0.091
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 375 FVEYYAREDAENCMRYINGTRLDDRIIRCD 464
+V++ A E E ++Y NGT+LDD +IR D
Sbjct: 205 YVKFGAEESVEKALKY-NGTKLDDHVIRVD 233
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS+ +E + ++S+ G++ + + DK GF F+ Y + + NG
Sbjct: 43 GGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGI 102
Query: 435 RLDDRIIRCD 464
L R+IR D
Sbjct: 103 SLHKRMIRVD 112
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM----RYINGTRLD 443
TE+ + E +++ G + + + LDK + P GF FV + + + C+ +NG R D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 444 DR 449
R
Sbjct: 148 VR 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 294 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
E YS+ G+I +I+ D K GF FV + + + + M+
Sbjct: 3 EFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.091
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM----RYINGTRLD 443
TE+ + E +++ G + + + LDK + P GF FV + + + C+ +NG R D
Sbjct: 88 TEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHMVNGHRCD 147
Query: 444 DR 449
R
Sbjct: 148 VR 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 294 ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
E YS+ G+I +I+ D K GF FV + + + + M+
Sbjct: 3 EFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
TT+E + ++SR G I + D+ + F+E+ + E ++ +DDR
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 311
Query: 453 IRCDWDAGFIEGPQYGRGKQE 515
I D+ + +Y Q+
Sbjct: 312 IHVDFSQSVSQNYKYKPKSQQ 332
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
TT+E + ++SR G I + D+ + F+E+ + E ++ +DDR
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 311
Query: 453 IRCDWDAGFIEGPQYGRGKQE 515
I D+ + +Y Q+
Sbjct: 312 IHVDFSQSVSQNYKYKPKSQQ 332
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
TT+E + ++SR G I + D+ + F+E+ + E ++ +DDR
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRR 242
Query: 453 IRCDWDAGFIEGPQYGRGKQE 515
I D+ + +Y Q+
Sbjct: 243 IHVDFSQSVSQNYKYKPKSQQ 263
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = +3
Query: 228 TKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
T S + G+L +E ++E +S G + + + D + G+ +V + DAE
Sbjct: 53 TYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAE 112
Query: 408 NCMRYINGTRLDDRIIRCDW 467
+ +N + R +R W
Sbjct: 113 RALDTMNFEVIHGRPMRIMW 132
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/80 (22%), Positives = 35/80 (43%)
Frame = +3
Query: 228 TKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
T S + G+L +E ++E +S G + + + D + G+ +V + DAE
Sbjct: 53 TYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAE 112
Query: 408 NCMRYINGTRLDDRIIRCDW 467
+ +N + R +R W
Sbjct: 113 RALDTMNFEVIHGRPMRIMW 132
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Frame = +3
Query: 276 TEEQIYELYSRCGD----IRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
TEE + ++++ CG ++RV + D+ K G+CF+E+ ++A + +NG R+
Sbjct: 80 TEETLSQVFTECGHAPYKVKRVYVK-DELK----GYCFIEFITFDEARQTLYDLNGNRI 133
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
G LS TT+EQ+ +S+ G + I+ D K GF FV + + AE+ M
Sbjct: 54 GGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
G LS TT+EQ+ +S+ G + I+ D K GF FV + + AE+ M
Sbjct: 74 GGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.48
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
G LS TT+EQ+ +S+ G + I+ D K GF FV + + AE+ M
Sbjct: 75 GGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAM 128
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G++SF E+ + + G I+ + M D F FVEY E A +NG
Sbjct: 107 GSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQ 166
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 167 MLGGRNLK 174
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G++SF E+ + + G I+ + M D F FVEY E A +NG
Sbjct: 107 GSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQ 166
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 167 MLGGRNLK 174
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.7 bits (66), Expect = 0.84
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G++SF E+ + + G I+ + M D F FVEY E A +NG
Sbjct: 107 GSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQ 166
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 167 MLGGRNLK 174
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
NL + T E+ + L+ + G++ V + +DK GF VE+ E A ++G
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDG 342
>Z72503-4|CAA96595.1| 354|Caenorhabditis elegans Hypothetical
protein C26C6.2 protein.
Length = 354
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 342 DKYKKTPCGFCFVEYYAREDAENCMRYI 425
+K KK+P CF EY R+D YI
Sbjct: 277 EKIKKSPLTICFPEYSGRQDYHEASAYI 304
>M38251-1|AAA28059.1| 354|Caenorhabditis elegans G-o protein alpha
subunit protein.
Length = 354
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 342 DKYKKTPCGFCFVEYYAREDAENCMRYI 425
+K KK+P CF EY R+D YI
Sbjct: 277 EKIKKSPLTICFPEYSGRQDYHEASAYI 304
>AY008140-1|AAG32093.1| 354|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 354
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 342 DKYKKTPCGFCFVEYYAREDAENCMRYI 425
+K KK+P CF EY R+D YI
Sbjct: 277 EKIKKSPLTICFPEYSGRQDYHEASAYI 304
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQ-------IYELYSRCGDIRRVIMGLDKYKKTPC 365
Q R RK GN+ F TE++ IY+ + I + K+ P
Sbjct: 6 QNRKRKRNVENRQVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPP- 64
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDD 446
GF FV + A + ++Y+NG ++ D
Sbjct: 65 GFAFVTFKRTVHAFDAVKYLNGKKICD 91
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L+ +E+ I + G IR V++ GF FVE+ + DAE+ + +NG
Sbjct: 8 GRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 435 RL-DDRII 455
L +R+I
Sbjct: 60 ELGGERVI 67
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L+ +E+ I + G IR V++ GF FVE+ + DAE+ + +NG
Sbjct: 8 GRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 435 RL-DDRII 455
L +R+I
Sbjct: 60 ELGGERVI 67
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L+ +E+ I + G IR V++ GF FVE+ + DAE+ + +NG
Sbjct: 8 GRLTSRVSEKDIEHFFRGYGQIRDVLL--------KNGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 435 RL-DDRII 455
L +R+I
Sbjct: 60 ELGGERVI 67
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + IY+ +S G+I + +D+ + G+ FV + E A+N ++ +NG
Sbjct: 126 NLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSK-GYGFVHFETEEAAQNAIQKVNGML 184
Query: 438 L 440
L
Sbjct: 185 L 185
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + IY+ +S G+I + +D+ + G+ FV + E A+N ++ +NG
Sbjct: 63 NLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSK-GYGFVHFETEEAAQNAIQKVNGML 121
Query: 438 L 440
L
Sbjct: 122 L 122
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + IY+ +S G+I + +D+ + G+ FV + E A+N ++ +NG
Sbjct: 126 NLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSK-GYGFVHFETEEAAQNAIQKVNGML 184
Query: 438 L 440
L
Sbjct: 185 L 185
>Z93384-4|CAE17903.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 369 IHKVFSCICLVPLLLFLYLRIVNTVHKFALLLCKMKGFHVKR 244
I KVFSCI +P ++FL + +V +H A + +K F K+
Sbjct: 157 IVKVFSCIYAIPTVIFLPVYVV--IHFVANIKGSLKCFRRKK 196
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G + TE+ + + GD+ + + +D GF FVE+ EDA + +N +
Sbjct: 16 GGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNES 75
Query: 435 RLDDRIIRCDW 467
L + IR ++
Sbjct: 76 ELFGKTIRVNF 86
>AL021492-15|CAE18000.1| 308|Caenorhabditis elegans Hypothetical
protein Y45F10D.15 protein.
Length = 308
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 369 IHKVFSCICLVPLLLFLYLRIVNTVHKFALLLCKMKGFHVKR 244
I KVFSCI +P ++FL + +V +H A + +K F K+
Sbjct: 157 IVKVFSCIYAIPTVIFLPVYVV--IHFVANIKGSLKCFRRKK 196
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 231 KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 410
K + L NL E+ I +++ G I ++ + +D ++ GF + + +DA+
Sbjct: 124 KGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENR-GFATITFRNADDAQK 182
Query: 411 CMRYINGTRLDDRIIR 458
+N L R IR
Sbjct: 183 SCEQLNNFELAGRCIR 198
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 28.3 bits (60), Expect = 4.5
Identities = 18/76 (23%), Positives = 34/76 (44%)
Frame = +3
Query: 231 KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 410
K + L NL E+ I +++ G I ++ + +D ++ GF + + +DA+
Sbjct: 269 KGPTHVLVENLHPKIDEKMIRDIFESFGRIEKIDLEVDSNRENR-GFATITFRNADDAQK 327
Query: 411 CMRYINGTRLDDRIIR 458
+N L R IR
Sbjct: 328 SCEQLNNFELAGRCIR 343
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
protein C05C10.2b protein.
Length = 1553
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3
Query: 477 IQHPSHSELFGHPASCHLYTSYNFRHLPAHSILQNKIHKVFSCICLVPLLLFLYLRIVNT 298
I + HS+ A +++ + +HLP L N + + + + L + Y +V
Sbjct: 528 ISNCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPNMVLPLPTSMPLDSEICAFYRVLVEN 587
Query: 297 VHKFALLLCKMK--GFH 253
K+ L+ C M G+H
Sbjct: 588 KSKYILIACHMNVHGYH 604
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
protein C05C10.2a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3
Query: 477 IQHPSHSELFGHPASCHLYTSYNFRHLPAHSILQNKIHKVFSCICLVPLLLFLYLRIVNT 298
I + HS+ A +++ + +HLP L N + + + + L + Y +V
Sbjct: 528 ISNCRHSDAIDFAAMSYIWKNIRQQHLPKLPKLPNMVLPLPTSMPLDSEICAFYRVLVEN 587
Query: 297 VHKFALLLCKMK--GFH 253
K+ L+ C M G+H
Sbjct: 588 KSKYILIACHMNVHGYH 604
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 280 SVV*NERFPCKALTKLLVIFLVRFWIP*NVGHDRNLFQLKNS 155
SVV +R L ++ +F V W+P NV H N F+L NS
Sbjct: 261 SVVERQRRTHLLLVCVVAVFAVA-WLPLNVFHIFNTFELVNS 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,139
Number of Sequences: 27780
Number of extensions: 257965
Number of successful extensions: 819
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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