Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0356
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 135 2e-32
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 52 3e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 50 9e-07
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 50 9e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 47 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 1e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 47 1e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 46 1e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 46 2e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 46 2e-05
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 8e-05
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 44 1e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 43 1e-04
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 42 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 42 3e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 41 7e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 40 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.002
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 40 0.002
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.002
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 39 0.003
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 39 0.003
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 38 0.004
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.004
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 38 0.005
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 38 0.007
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 38 0.007
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.012
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 36 0.016
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 36 0.021
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 36 0.021
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 36 0.028
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 36 0.028
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.028
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.028
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.028
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 36 0.028
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 35 0.036
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.036
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 35 0.036
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 35 0.036
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 35 0.036
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.048
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 35 0.048
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 35 0.048
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 34 0.064
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.064
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 34 0.064
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 34 0.064
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.064
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.084
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.084
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.084
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 34 0.084
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.084
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.11
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 33 0.11
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.15
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 33 0.15
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 33 0.15
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 33 0.19
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 33 0.19
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 33 0.19
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.19
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.19
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 33 0.19
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.26
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 32 0.26
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 32 0.26
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 32 0.34
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.45
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 31 0.78
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 31 0.78
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.78
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.78
At5g54020.1 68418.m06719 expressed protein 30 1.0
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 30 1.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 30 1.0
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 30 1.4
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 30 1.4
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 30 1.4
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 30 1.4
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 1.8
At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi... 29 2.4
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 2.4
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 2.4
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 2.4
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 29 2.4
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 3.2
At5g24440.1 68418.m02880 RNA-binding protein, putative 28 4.2
At4g30870.1 68417.m04383 repair endonuclease family protein cont... 28 4.2
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 28 4.2
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 28 4.2
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 28 5.5
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 28 5.5
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 28 5.5
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 28 5.5
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 28 5.5
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 28 5.5
At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containi... 27 7.3
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 27 7.3
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 27 7.3
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 27 7.3
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 27 9.6
At1g62700.1 68414.m07077 no apical meristem (NAM) family protein... 27 9.6
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 135 bits (326), Expect = 2e-32
Identities = 60/105 (57%), Positives = 80/105 (76%)
Frame = +3
Query: 195 F*GIQKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFC 374
F G Q+ + ++ GN+SFYTTEEQ+YEL+SR G+I+++IMGLDK KTPCGFC
Sbjct: 19 FSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFC 78
Query: 375 FVEYYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGK 509
FV +Y+RED E+ ++YI+GT LDDR IR D+D GF EG Q+GRG+
Sbjct: 79 FVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGR 123
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +2
Query: 506 QTGGQVRDEYRTDYDXGRGXMEK 574
++GGQVRDEYRTDYD RG K
Sbjct: 123 RSGGQVRDEYRTDYDPARGGYGK 145
Score = 34.7 bits (76), Expect = 0.048
Identities = 13/34 (38%), Positives = 25/34 (73%)
Frame = +1
Query: 169 EISSYRDQHFKGSRSEQEKLLKASSTLYMETFHF 270
++S+YRD+ F G++ E ++ L+AS+T+Y+ F
Sbjct: 10 KLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSF 43
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 52.0 bits (119), Expect = 3e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS T E + EL+ G + RV + +D+ GF FV + +REDA+ + +NG
Sbjct: 219 NLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYG 278
Query: 438 LDDRIIRCDW 467
D+ I+R +W
Sbjct: 279 YDNLILRVEW 288
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 50.4 bits (115), Expect = 9e-07
Identities = 23/71 (32%), Positives = 40/71 (56%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LSF TTE+ + E +S+CG + + +D+ GF FV + + ++A+ + NG
Sbjct: 39 GGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQ 98
Query: 435 RLDDRIIRCDW 467
+L+ R I D+
Sbjct: 99 QLNGRTIFVDY 109
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 50.4 bits (115), Expect = 9e-07
Identities = 24/80 (30%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +3
Query: 228 TKSFVNALH-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA 404
++SF + L +SF +TEE + + +S+ G + +V + +DK + P GF +V + ++E+A
Sbjct: 16 SRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEA 75
Query: 405 ENCMRYINGTRLDDRIIRCD 464
E + +N +D R++ D
Sbjct: 76 EKALLELNAQLVDGRVVILD 95
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LSF TTE+ + + + + G++ + M +DK P GF F+ Y E+A ++ ++G L
Sbjct: 84 LSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFL 143
Query: 441 DDRII 455
D R+I
Sbjct: 144 DGRVI 148
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NLS T + EL+ G + R + +D+ GF FV + +REDA+ + +NG
Sbjct: 180 NLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYG 239
Query: 438 LDDRIIRCDW 467
D+ I+R +W
Sbjct: 240 YDNLILRVEW 249
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Frame = +3
Query: 219 RKITKSFVNALHGNLSFYTTEEQIYE---LYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 389
R+ T S N G+LS T+ +Y+ ++S C D R +M K ++ GF FV +
Sbjct: 137 REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDAR--VMWDQKTGRSR-GFGFVSFR 193
Query: 390 AREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIELT 545
++DA+ + +NG L R IRC+W +G G K + + +ELT
Sbjct: 194 NQQDAQTAINEMNGKWLSSRQIRCNWAT---KGATSGDDKLSSDGKSVVELT 242
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 46.8 bits (106), Expect = 1e-05
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Frame = +3
Query: 219 RKITKSFVNALHGNLSFYTTEEQIY---ELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 389
R+ T S N G+LS T+ ++ +Y C D R +M K ++ GF FV +
Sbjct: 132 REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDAR--VMWDQKTGRSR-GFGFVSFR 188
Query: 390 AREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIELTMTV 554
++DA+ + I G L R IRC+W +G G KQ + + +ELT V
Sbjct: 189 NQQDAQTAIDEITGKWLGSRQIRCNWAT---KGATSGEDKQSSDSKSVVELTSGV 240
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/109 (26%), Positives = 51/109 (46%)
Frame = +3
Query: 219 RKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYARE 398
R+ T S N G+LS T+ +++ +S + D+ GF FV + ++
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Query: 399 DAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIELT 545
DA+ + +NG + R IRC+W +G +G K + + +ELT
Sbjct: 201 DAQTAINEMNGKWVSSRQIRCNWAT---KGATFGEDKHSSDGKSVVELT 246
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
+LS E + E++ G++ V + +D+ P G +VE+ AR DAE Y++G +
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 438 LDDRIIR 458
+D ++++
Sbjct: 164 IDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
+LS E + E++ G++ V + +D+ P G +VE+ AR DAE Y++G +
Sbjct: 104 SLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYMDGAQ 163
Query: 438 LDDRIIR 458
+D ++++
Sbjct: 164 IDGKVVK 170
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
T EE I + G+I+ + + LD+ G+ +EY +E+A++ + +NG L +
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQN 165
Query: 453 IRCDWDAGFIEGPQYG 500
+ DW F GP G
Sbjct: 166 VSVDW--AFSSGPSGG 179
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/85 (28%), Positives = 44/85 (51%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E++ + + CG + RV + DK+ + P GF +VE+ E +N + +N +
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEVEAVQNSL-ILNES 165
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGK 509
L R I+ + G + RG+
Sbjct: 166 ELHGRQIKVSAKRTNVPGMRQFRGR 190
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 43.2 bits (97), Expect = 1e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +3
Query: 219 RKITKSFVNALHGNLSFYTTEEQIYELYSR---CGDIRRVIMGL-DKYKKTPCGFCFVEY 386
R+ T S N G+LS T+ +++ +S C R + D+ GF FV +
Sbjct: 141 REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSF 200
Query: 387 YAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIELT 545
++DA+ + +NG + R IRC+W +G +G K + + +ELT
Sbjct: 201 RNQQDAQTAINEMNGKWVSSRQIRCNWAT---KGATFGEDKHSSDGKSVVELT 250
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L F T+ Q+Y+ ++ + V + D T G+ +V Y +DAE M+ +N +
Sbjct: 51 GDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYS 110
Query: 435 RLDDRIIRCDWDA 473
L+ ++IR + +
Sbjct: 111 YLNGKMIRITYSS 123
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +3
Query: 237 FVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
F N NLS TT++++ + + G I ++ D K+ C F FV + EDA +
Sbjct: 224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRC-FGFVNFENPEDAARAV 282
Query: 417 RYINGTRLDDR 449
+NG + DD+
Sbjct: 283 EALNGKKFDDK 293
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + ++E +S CG I + D ++ G+ FV++ + A+N + +NG
Sbjct: 140 NLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSR-GYGFVQFDTEDSAKNAIEKLNGKV 198
Query: 438 LDDRII 455
L+D+ I
Sbjct: 199 LNDKQI 204
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/65 (33%), Positives = 36/65 (55%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLS TT++ + E +S G++ I+ D+Y GF FV Y + +AE + ++G
Sbjct: 8 GNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGK 67
Query: 435 RLDDR 449
L+ R
Sbjct: 68 ELNGR 72
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 282 EQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 461
+++ +S+ G+I +GLDKY P GFC Y + E A+ + + T + I+ C
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHC 317
Query: 462 DWDAGFIEGPQYGRGKQ 512
I+GP+ G+ +Q
Sbjct: 318 Q---KAIDGPKPGKQQQ 331
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 282 EQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 461
+++ +S+ G+I +GLDKY P GFC Y + E A+ + + T + I+ C
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHC 317
Query: 462 DWDAGFIEGPQYGRGKQ 512
I+GP+ G+ +Q
Sbjct: 318 Q---KAIDGPKPGKQQQ 331
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 41.9 bits (94), Expect = 3e-04
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 282 EQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIRC 461
+++ +S+ G+I +GLDKY P GFC Y + E A+ + + T + I+ C
Sbjct: 259 QKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKT-FEGHILHC 317
Query: 462 DWDAGFIEGPQYGRGKQ 512
I+GP+ G+ +Q
Sbjct: 318 Q---KAIDGPKPGKQQQ 331
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LSFYT+E+ + + G++ V + +DK K G+ F+EY E A ++ +NG +
Sbjct: 289 LSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKII 348
Query: 441 DDRIIRCD 464
+ +I D
Sbjct: 349 NGWMIVVD 356
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 40.7 bits (91), Expect = 7e-04
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +3
Query: 204 IQKRTRKIT-KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFV 380
I KR R I K+ + LS YTT++ + +L++ R+I D+ + P GF F+
Sbjct: 58 ISKRRRLIGGKTLTCVSNSGLSAYTTDQSLRQLFA---PFARLIK--DQQTQRPKGFGFI 112
Query: 381 EYYAREDAENCMRYINGTRLDDRII 455
+ + +DA+ ++ +NG ++ R+I
Sbjct: 113 TFESEDDAQKALKALNGKIVNGRLI 137
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/86 (25%), Positives = 45/86 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E++ + + CG + RV + DK+ + P GF +VE+ E + ++ +N +
Sbjct: 97 GNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQ-PKGFAYVEFVEVEAVQEALQ-LNES 154
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQ 512
L R ++ + G + RG++
Sbjct: 155 ELHGRQLKVLQKRTNVPGLKQFRGRR 180
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = +3
Query: 207 QKRTRKITKS-FVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVE 383
Q+R K+ F N NL+ TT++ + + G I ++ D K+ GF FV
Sbjct: 17 QERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK-GFGFVN 75
Query: 384 YYAREDAENCMRYINGTRLDDRIIRCDWDAGFIEGPQYGRGKQEARLEMNIE 539
+ +DA + +NG + DD+ +W G + + R E N++
Sbjct: 76 FENADDAARAVESLNGHKFDDK----EWYVGRAQKKSERETELRVRYEQNLK 123
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L +EE ++EL+ + G + V + D+ + F+EY + EDA+ ++ +N
Sbjct: 30 GGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMI 89
Query: 435 RLDDRIIR 458
+L + IR
Sbjct: 90 KLHGKPIR 97
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/70 (30%), Positives = 32/70 (45%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL F I ++S G + V + + P GF FV++ ++DA N ++ NG
Sbjct: 337 NLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHM 396
Query: 438 LDDRIIRCDW 467
R I DW
Sbjct: 397 FGKRPIAVDW 406
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
L + T Q+ E +S G +RR + +K GF FV++ +ED + NG+ +
Sbjct: 27 LPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTV 86
Query: 441 DDRII 455
R I
Sbjct: 87 GGRRI 91
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E++ + CG + RV + +DK+ + P GF +VE+ E + ++ +N +
Sbjct: 94 GNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQ-PKGFAYVEFVEVEAVQEALQ-LNES 151
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 152 ELHGRQLK 159
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + T E++ + CG + RV + +DK+ + P GF +VE+ E + ++ +N +
Sbjct: 94 GNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQ-PKGFAYVEFVEVEAVQEALQ-LNES 151
Query: 435 RLDDRIIR 458
L R ++
Sbjct: 152 ELHGRQLK 159
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNLS+ T E + + CGD+ + D G+ FV Y ++ + E + ++G
Sbjct: 182 GNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF 241
Query: 435 RLDDRIIRCDWDAG 476
L+ R IR + G
Sbjct: 242 ELEGRAIRVNLAQG 255
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + TEE++ E +S G I V + LDK K G ++ Y E A M ++ +
Sbjct: 267 NLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSS 326
Query: 438 LDDRII 455
R++
Sbjct: 327 FQGRLL 332
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N++F T+ ++ +L+S G I+ + + + G+ FVE+ +++A N + + T
Sbjct: 675 NIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQY-AGYAFVEFVTKQEALNAKKALASTH 733
Query: 438 LDDRIIRCDW 467
R + +W
Sbjct: 734 FYGRHLVLEW 743
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ + TEEQ+ E+ G + + D+ P G+ F EY E A + R +
Sbjct: 14 GNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSY 73
Query: 435 RLDDRIIRCDW 467
++ R +R D+
Sbjct: 74 EINGRQLRVDF 84
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.9 bits (84), Expect = 0.005
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L ++ E + +S+ G++ V + +K P G+ F+E+ + AE ++ NGT
Sbjct: 29 GDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGT 88
Query: 435 RL--DDRIIRCDWDAGFIEGPQYGRG 506
++ + R +W A F G + G
Sbjct: 89 QMPGTELTFRLNW-ASFGSGQKVDAG 113
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +3
Query: 231 KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAEN 410
+ F + NL +EE ++ ++S G + R ++ D ++ GF F+E+ + + A
Sbjct: 14 RKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGR 72
Query: 411 CMRYINGTRLDDRII 455
M +++G + +I+
Sbjct: 73 AMLHMDGRLIGQKIL 87
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/67 (35%), Positives = 32/67 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS T E + E + G I ++ LD+ GF FV Y + E A N M+ +
Sbjct: 41 GGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNK 100
Query: 435 RLDDRII 455
LD RII
Sbjct: 101 ELDGRII 107
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 428
N+ E++ E + R G +R V + D Y P GF FVE+ DA R +N
Sbjct: 53 NIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMN 109
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3
Query: 267 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
F E + ++Y++ G I+ ++M +D K G+CF+E+ ++A+N +G +L
Sbjct: 72 FEKLEGVVKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 131
Query: 441 D 443
D
Sbjct: 132 D 132
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 35.9 bits (79), Expect = 0.021
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T++++ ++ + G++ V + K CGF V+Y + AE+ + +NGT
Sbjct: 265 GGLDANVTDDELKSIFGQFGELLHVKIPPGKR----CGF--VQYANKASAEHALSVLNGT 318
Query: 435 RLDDRIIRCDW 467
+L + IR W
Sbjct: 319 QLGGQSIRLSW 329
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L + E I ++++ G+ + +K G+ F+E+ + AE ++ NG
Sbjct: 65 GDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGA 124
Query: 435 RL--DDRIIRCDW 467
+ ++ R +W
Sbjct: 125 PMPSTEQTFRLNW 137
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 35.9 bits (79), Expect = 0.021
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N+ F T++ + +++ G++ + + D P G ++E+ +E AEN + ++GT
Sbjct: 522 NVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS-LDGTS 580
Query: 438 LDDRIIR 458
RI++
Sbjct: 581 FMSRILK 587
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LS T++ + +++ G + + ++ + GF FV + +DAE C++Y+N + L
Sbjct: 79 LSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 138
Query: 441 DDR 449
+ R
Sbjct: 139 EGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 35.5 bits (78), Expect = 0.028
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LS T++ + +++ G + + ++ + GF FV + +DAE C++Y+N + L
Sbjct: 78 LSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVL 137
Query: 441 DDR 449
+ R
Sbjct: 138 EGR 140
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 35.5 bits (78), Expect = 0.028
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 234 SFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 413
S V G++ TEE+I + + G++ V + DK G CFV+Y +DA+
Sbjct: 118 STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Query: 414 MRYIN 428
+R ++
Sbjct: 178 IRALH 182
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 35.5 bits (78), Expect = 0.028
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 234 SFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 413
S V G++ TEE+I + + G++ V + DK G CFV+Y +DA+
Sbjct: 118 STVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRA 177
Query: 414 MRYIN 428
+R ++
Sbjct: 178 IRALH 182
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.5 bits (78), Expect = 0.028
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 389
++ TE +YE +SR G +R V + +D+ + G +VE+Y
Sbjct: 189 IALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFY 231
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL +E+ + +++ G + V + D+ GF FV++ EDA N +
Sbjct: 290 GNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCK-GFGFVQFARLEDARNALNLNGQL 348
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQEARLE 527
+ R I+ E P+ G+ + L+
Sbjct: 349 EIAGRAIKVSAVTDQTEVPEAGQTQTTGDLD 379
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 35.5 bits (78), Expect = 0.028
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T+E + + +S G+I V + + K CGF V++ R +AE + +NGT
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK----GCGF--VQFVNRPNAEEALEKLNGT 364
Query: 435 RLDDRIIRCDW 467
+ + +R W
Sbjct: 365 VIGKQTVRLSW 375
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + + E I EL+S GD++R + D+ ++ G V + R DA ++ N +
Sbjct: 114 NLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSK-GTAEVVFSRRGDALAAVKRYNNVQ 172
Query: 438 LDDRIIRCD 464
LD ++++ +
Sbjct: 173 LDGKLMKIE 181
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.036
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GN+ T EQ+ +L G + +V + DKY F F + EDA + +NG
Sbjct: 81 GNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGN 140
Query: 435 RLDDRIIR 458
++ R I+
Sbjct: 141 TVEGREIK 148
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.1 bits (77), Expect = 0.036
Identities = 17/70 (24%), Positives = 35/70 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L++ T++ + + + + G + + LDK+ GF F+ + ++ + + +NG
Sbjct: 12 GGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGM 71
Query: 435 RLDDRIIRCD 464
LD R I D
Sbjct: 72 DLDGRTITVD 81
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 35.1 bits (77), Expect = 0.036
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
N+S +++ E +SR G+I +GLDK P GF Y + E A+ + + T
Sbjct: 233 NVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKT- 291
Query: 438 LDDRIIRC 461
+ ++ C
Sbjct: 292 FEGHVLHC 299
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 35.1 bits (77), Expect = 0.036
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 243 NALH-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
N L+ G L+ E ++ + GDI+ V LD+ + F FV + REDA M
Sbjct: 13 NTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 420 YINGTRLDDRIIRCDW 467
++G L R++ ++
Sbjct: 73 NMDGAELYGRVLTVNY 88
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.048
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T++ + ++S+ G+I V + K CGF V++ + AE +R +NG
Sbjct: 266 GGLDASVTDDHLKNVFSQYGEIVHVKIPAGKR----CGF--VQFSEKSCAEEALRMLNGV 319
Query: 435 RLDDRIIRCDW 467
+L +R W
Sbjct: 320 QLGGTTVRLSW 330
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LS TE + + +++ G + V + LD + + GF F+ + DA C+R ++ + L
Sbjct: 52 LSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 111
Query: 441 DDRII 455
R+I
Sbjct: 112 QGRVI 116
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
LS TE + + +++ G + V + LD + + GF F+ + DA C+R ++ + L
Sbjct: 82 LSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVL 141
Query: 441 DDRII 455
R+I
Sbjct: 142 QGRVI 146
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 34.3 bits (75), Expect = 0.064
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 267 FYTTEEQIYELYSRCGDIRR--VIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRL 440
F E + ++Y++ G I+ + M +D K G+CF+E+ ++A+N +G +L
Sbjct: 71 FEKLEGVVKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNAKEKSHGYKL 130
Query: 441 D 443
D
Sbjct: 131 D 131
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.3 bits (75), Expect = 0.064
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS T+ + +SR GDI + L++ GF F+ + R + +R ++G
Sbjct: 12 GGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGR 71
Query: 435 RLDDRII---RCDWDAGFIEGPQYG-RGKQEA 518
DR+I R + G +G +G RG +++
Sbjct: 72 DFGDRVISVNRAEPKLGRDDGESHGSRGGRDS 103
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 34.3 bits (75), Expect = 0.064
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L TEE + + +S G++ V + + K CGF V++ R+ AE + +NGT
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGK----GCGF--VQFANRQSAEEAIGNLNGT 385
Query: 435 RLDDRIIRCDW 467
+ +R W
Sbjct: 386 VIGKNTVRLSW 396
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 34.3 bits (75), Expect = 0.064
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L T+E + + ++ G+I V + + K CGF V++ R +AE + +NGT
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK----GCGF--VQFVNRPNAEEALEKLNGT 362
Query: 435 RLDDRIIRCDW 467
+ + +R W
Sbjct: 363 VIGKQTVRLSW 373
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEG 488
G+ FVE+ + + A+ +R NGT + D+ R +W A F G
Sbjct: 145 GYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTG 186
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.064
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
G L ++TT+ +I + S+ G ++ + ++ G+C VE+Y A C +NG
Sbjct: 207 GELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGMNG 265
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L++ T +E + +S+ GD+ + D+ GF FV + + + + +NG
Sbjct: 11 GGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGK 70
Query: 435 RLDDRII 455
LD R+I
Sbjct: 71 ELDGRVI 77
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L++ T +E + +S+ GD+ + D+ GF FV + + + + +NG
Sbjct: 11 GGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGK 70
Query: 435 RLDDRII 455
LD R+I
Sbjct: 71 ELDGRVI 77
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G L++ T +E + +S+ GD+ + D+ GF FV + + + + +NG
Sbjct: 11 GGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGK 70
Query: 435 RLDDRII 455
LD R+I
Sbjct: 71 ELDGRVI 77
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 33.9 bits (74), Expect = 0.084
Identities = 18/69 (26%), Positives = 37/69 (53%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL F T+E+ + +S G+I V + D+ K G+ F+++ +++DA + ++
Sbjct: 46 NLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRM 105
Query: 438 LDDRIIRCD 464
+ R+I D
Sbjct: 106 YNGRMIYID 114
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.084
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 279 EEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 443
EE + +S+ I+ + + DK+ GF FV +Y+ EDA + N T L+
Sbjct: 471 EEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALE 525
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYI--NGT 434
LS +TEE +Y++ + G + V + ++ GF F+++ + A M I +G
Sbjct: 305 LSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGI 364
Query: 435 RLDDR 449
LD R
Sbjct: 365 VLDGR 369
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 455
TE+ + ++ + G++ V + K CGF V+Y R AE + +NGT+L + I
Sbjct: 290 TEDDLKSVFGQFGELVHVKIPAGKR----CGF--VQYANRACAEQALSVLNGTQLGGQSI 343
Query: 456 RCDW 467
R W
Sbjct: 344 RLSW 347
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 33.5 bits (73), Expect = 0.11
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E +I +++ + G I V + L + PC +CFVE+ DAE+ ++ +G
Sbjct: 12 GNLPGDIREHEIEDIFYKYGRI--VDIELKVPPRPPC-YCFVEFEHSRDAEDAIKGRDGY 68
Query: 435 RLDDRIIRCD 464
LD +R +
Sbjct: 69 NLDGCRLRVE 78
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 389
TE +YE +S+ G +R V + +D+ + G ++E+Y
Sbjct: 180 TERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 217
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++ + +G
Sbjct: 12 GNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQEAR 521
D +R + G RG R
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGR 97
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 33.1 bits (72), Expect = 0.15
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DA++ + +G
Sbjct: 12 GNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 435 RLDDRIIRCDWDAGFIEGPQYGRGKQEAR 521
D +R + G RG R
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGR 97
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYIN 428
NL + + + R G ++ + + + Y P GF FV+Y EDA M+ +N
Sbjct: 53 NLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMN 109
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/78 (29%), Positives = 34/78 (43%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS T + L+SR G +R V M D + FVE+ DA++ Y++G
Sbjct: 16 GRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDPRDADDARHYLDGR 67
Query: 435 RLDDRIIRCDWDAGFIEG 488
D I ++ G G
Sbjct: 68 DFDGSRITVEFSRGAPRG 85
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/75 (28%), Positives = 40/75 (53%)
Frame = +3
Query: 207 QKRTRKITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
QK K++ +V N++ TEE++ + +S+CG I + D+ K+ GF FV +
Sbjct: 297 QKMIAKVSNIYVK----NVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK-GFGFVCF 351
Query: 387 YAREDAENCMRYING 431
E+A + ++ +G
Sbjct: 352 STPEEAIDAVKTFHG 366
Score = 31.9 bits (69), Expect = 0.34
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 222 KITKSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPC-GFCFVEYYARE 398
K + + N NL +E+ + E ++ G I V + + K + C G+ FV + E
Sbjct: 195 KPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI--VSLAIAKDENRLCRGYAFVNFDNPE 252
Query: 399 DAENCMRYINGTRLDDRII 455
DA +NGT+ + +
Sbjct: 253 DARRAAETVNGTKFGSKCL 271
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ + +G
Sbjct: 12 GNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 435 RLDDRIIRCD 464
D +R +
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ + +G
Sbjct: 12 GNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 435 RLDDRIIRCD 464
D +R +
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
GNL E ++ +L+S+ G + ++ + K P G+ FVE+ DAE+ + +G
Sbjct: 12 GNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 435 RLDDRIIRCD 464
D +R +
Sbjct: 69 DFDGHRLRVE 78
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 32.3 bits (70), Expect = 0.26
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
GN+ ++ +Y++ + G + + + DK P GF F EY E A+ ++ +G
Sbjct: 12 GNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 32.3 bits (70), Expect = 0.26
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L+ TTE + EL+ R GDI R+ + + GF F+ Y E+A + G
Sbjct: 23 GSLTPETTESDLTELFGRYGDIDRITVYSSR------GFAFIYYRHVEEAVAAKEALQGA 76
Query: 435 RLD 443
L+
Sbjct: 77 NLN 79
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 32.3 bits (70), Expect = 0.26
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 237 FVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCM 416
F N NLS ++E++ +++ G ++ D K+ GF FV + +DA +
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSK-GFGFVNFENSDDAARAV 281
Query: 417 RYINGTRLDDR 449
+NG DD+
Sbjct: 282 DALNGKTFDDK 292
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 213 RTRKITKSFV-NALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYY 389
R + KS V N NL + ++E +S G I + +D ++ G+ FV+Y
Sbjct: 123 RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSK-GYGFVQYD 181
Query: 390 AREDAENCMRYINGTRLDDR 449
E A+ + +NG L+D+
Sbjct: 182 TDEAAQGAIDKLNGMLLNDK 201
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.9 bits (69), Expect = 0.34
Identities = 14/60 (23%), Positives = 34/60 (56%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 455
+E ++ +++S G + V + ++ + G+ +V + ++EDA++ + +NG D R I
Sbjct: 89 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFI 148
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G+L ++TT+ ++ + G ++ V +K G+C VE+Y A C +NG
Sbjct: 239 GDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGY 298
Query: 435 RLDDR 449
+ R
Sbjct: 299 PFNGR 303
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G LS T + L+SR G +R V M D + FVE+ DA++ Y++G
Sbjct: 16 GRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDPRDADDARYYLDGR 67
Query: 435 RLDDRIIRCDWDAGFIEG 488
D I + G G
Sbjct: 68 DFDGSRITVEASRGAPRG 85
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 30.7 bits (66), Expect = 0.78
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 279 EEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRIIR 458
+E + + +S+ G++ V + + K CGF V++ R+ AE+ + +NGT + +R
Sbjct: 334 DEDLRQPFSQFGEVVSVKIPVGK----GCGF--VQFADRKSAEDAIESLNGTVIGKNTVR 387
Query: 459 CDW 467
W
Sbjct: 388 LSW 390
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
TT+E + + G+I + +DK G+ FV + R+ A ++ R+ +RI
Sbjct: 419 TTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRPE-KRMYNRI 477
Query: 453 IRCDWDAGFIEGPQYGRGKQEARLEMNIELT 545
+ C+ + E P +Q+ +NI+LT
Sbjct: 478 VVCNLAS---EKPGKAGKEQDMAEPVNIDLT 505
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 243 NALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRY 422
N NL + +YE +S G I + +D ++ G+ FV++ E A+ +
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSK-GYGFVQFEKEETAQAAIDK 191
Query: 423 INGTRLDDR 449
+NG L+D+
Sbjct: 192 LNGMLLNDK 200
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +3
Query: 234 SFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENC 413
SF N NL T++++ + + + GDI ++ D+ + F FV + + E A
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSR-SFGFVNFVSPEAAAVA 281
Query: 414 MRYINGTRLDDRII 455
+ +NG L + ++
Sbjct: 282 VEKMNGISLGEDVL 295
>At5g54020.1 68418.m06719 expressed protein
Length = 556
Score = 30.3 bits (65), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 444 HPASCHLYTSYNFRHLPAHSILQNKIHKVFSC 349
HP SC + SY FR + + L+N I+ + C
Sbjct: 16 HPLSCGTFESYTFRSILSIPKLRNGIYNCYHC 47
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 369 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
F F++Y A+EDA + N ++L D++I ++
Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 369 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
F F++Y A+EDA + N ++L D++I ++
Sbjct: 132 FAFIQYEAQEDATRALDATNSSKLMDKVISVEY 164
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = +3
Query: 264 SFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLD 443
S + TEE++ +++SR G+I V + K+ F ++ + ++A++ + Y+N +D
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKRKSDGKSR-QFAYIGFRTEQEAQDAITYVNKCFID 69
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 369 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
F F++Y A+EDA + N ++L D++I ++
Sbjct: 92 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 124
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 369 FCFVEYYAREDAENCMRYINGTRLDDRIIRCDW 467
F F++Y A+EDA + N ++L D++I ++
Sbjct: 133 FAFIQYEAQEDATRALDASNNSKLMDKVISVEY 165
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/70 (27%), Positives = 32/70 (45%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGT 434
G + F TE + ++S+ G+I V + DK GF F+ Y + + +NG
Sbjct: 41 GGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGA 100
Query: 435 RLDDRIIRCD 464
+ R I+ D
Sbjct: 101 LVLGRTIKVD 110
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 231 KSFVNALHGNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
K FV +LS + + E +S CG+I+ V + +D+ G ++E+
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
>At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 830
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 264 SFYTTEEQIYELYSRCGDIRRV--IMGLDKYKKTPCGFCFVEYYA 392
S + E + ++Y++CGDI + + G Y + P + YA
Sbjct: 580 SLVSIETSLVDMYAKCGDINKAEKVFGSKLYSELPLSNAMISAYA 624
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + + I EL+ +CG + V + K K GF FV + E+A+ + + +
Sbjct: 101 NLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNR-GFAFVTMASGEEAQAAIDKFDTFQ 159
Query: 438 LDDRII 455
+ RII
Sbjct: 160 VSGRII 165
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRLDDRII 455
G+ FV + RE+AEN + +NG + R I
Sbjct: 237 GYGFVSFATREEAENAITKLNGKEIMGRPI 266
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRI 452
T +E ++ ++SR G + + D + F+E+ +E E ++ +DDR
Sbjct: 254 TEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRR 313
Query: 453 IRCDW 467
I D+
Sbjct: 314 IHVDF 318
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
G + + TE Q+ L+ + V + +K + P G CF+ REDA+
Sbjct: 17 GQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAE 407
G + + TE Q+ L+ + V + +K + P G CF+ REDA+
Sbjct: 17 GQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = +3
Query: 240 VNALH-GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDA---- 404
V AL+ N+ T+ EQ+ EL+ R G++ +++ K K G FV Y R A
Sbjct: 291 VKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFG--FVHYAERSSALKAV 348
Query: 405 ENCMRY-INGTRLD 443
++ RY +NG L+
Sbjct: 349 KDTERYEVNGQPLE 362
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTRLDDRII 455
TEEQ+ L+ CG + M D YK F F+E+ E A + +R +GT I
Sbjct: 149 TEEQLASLFLSCGQVVDCRMCGD-YKSI-LRFAFIEFTDAEGARSALRK-SGTMFGSHPI 205
Query: 456 R 458
R
Sbjct: 206 R 206
>At4g30870.1 68417.m04383 repair endonuclease family protein
contains Pfam PF02732 : ERCC4 domain; similar to repair
endonuclease (TIGR:At5g41150) [Arabidopsis thaliana]
Length = 661
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 136 KRSYDSMNSSIEISSYRDQHFKGSRSEQEKLL 231
+++ D M SSI + YRDQ + RS +KL+
Sbjct: 362 RKNVDDMRSSIRDNRYRDQKLRLQRSGFKKLI 393
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG--FCFVEYYAREDAENCMRYING 431
N+ + +++ +L+ G+IR + ++TP F+EYY DAE ++ +N
Sbjct: 276 NVDTTVSNDELLQLFGAYGEIREI-------RETPNRRFHRFIEYYDVRDAETALKALNR 328
Query: 432 TRLDDRIIRCD 464
+ + + I+ +
Sbjct: 329 SEIGGKCIKLE 339
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCG--FCFVEYYAREDAENCMRYING 431
N+ + +++ +L+ G+IR + ++TP F+EYY DAE ++ +N
Sbjct: 289 NVDTTVSNDELLQLFGAYGEIREI-------RETPNRRFHRFIEYYDVRDAETALKALNR 341
Query: 432 TRLDDRIIRCD 464
+ + + I+ +
Sbjct: 342 SEIGGKCIKLE 352
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 121 QVYKMKRSYDS-MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHFTQQKSKFMN 297
+V KM+ S M+ +I S +D KG+R E +L S+ + Q+K +
Sbjct: 391 EVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELA 450
Query: 298 CIHDAE 315
D+E
Sbjct: 451 AAKDSE 456
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 121 QVYKMKRSYDS-MNSSIEISSYRDQHFKGSRSEQEKLLKASSTLYMETFHFTQQKSKFMN 297
+V KM+ S M+ +I S +D KG+R E +L S+ + Q+K +
Sbjct: 391 EVAKMRSQLGSEMSMQTQILSTKDAELKGAREEINRLQSEFSSYKIRAHALLQKKDMELA 450
Query: 298 CIHDAE 315
D+E
Sbjct: 451 AAKDSE 456
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/52 (21%), Positives = 31/52 (59%)
Frame = +3
Query: 276 TEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYING 431
+E ++ +++S G + V + ++ + G+ +V + ++EDA++ + +NG
Sbjct: 70 SEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNG 121
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
TT E + L+S GD+ I+ LDK G+ FV +
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 273 TTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
TT E + L+S GD+ I+ LDK G+ FV +
Sbjct: 86 TTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTF 123
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 258 NLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMRYINGTR 437
NL + ++E +S G I + +D ++ G+ FV++ E A+ + +NG
Sbjct: 142 NLDASIDNKALFETFSSFGTILSCKVAMDVTGRSK-GYGFVQFEKEESAQAAIDKLNGML 200
Query: 438 LDDR 449
++D+
Sbjct: 201 MNDK 204
>At2g33760.1 68415.m04140 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 583
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 288 IYELYSRCGDIRRVIMGLDKYKKT 359
+ LYSRCGD+ + DK K+T
Sbjct: 249 LINLYSRCGDVGKAREVFDKMKET 272
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
L + TT E + ++ G+I + +DK GF FV + R+ A+ ++
Sbjct: 111 LPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 261 LSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEYYAREDAENCMR 419
L + TT E + ++ G+I + +DK GF FV + R+ A+ ++
Sbjct: 111 LPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +3
Query: 366 GFCFVEYYAREDAENCMRYINGTRL--DDRIIRCDWDAGFIEG 488
G+ FVE+ + + A+ +R NGT + D+ R +W A F G
Sbjct: 145 GYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNW-ASFSTG 186
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 255 GNLSFYTTEEQIYELYSRCGDIRRVIMGLDKYKKTPCGFCFVEY 386
GNL++ TTE I +L+S C I V +G +K G+ V++
Sbjct: 267 GNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDF 309
>At1g62700.1 68414.m07077 no apical meristem (NAM) family protein
similar to NAC2 (GI:6456751) [Arabidopsis thaliana];
contains Pfam PF02365 : No apical meristem (NAM) protein
Length = 394
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 434 RAIYIPHTIFGIFPRIVFYKTKS 366
+AIYI H++ G+ +VFYK ++
Sbjct: 98 KAIYIRHSLIGMRKTLVFYKGRA 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,863,438
Number of Sequences: 28952
Number of extensions: 230881
Number of successful extensions: 699
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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