Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0352
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    81   1e-16
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   9.9  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 51/150 (34%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
 Frame = +3

Query: 147 RDISREGTYQGKHTILVNKGLPMXXXXXXXXXXXXXXXXXXXXXHRRLSPNIEIGRI*PP 326
           RD+S E    G HT  V KGL +                     H  LSP  E+G + PP
Sbjct: 69  RDMSTEANIHGAHTKAVTKGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPP 128

Query: 327 SRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQXKXRLFLTILLGFYFTIL 500
             I     +P ++PLLNT+IL+ SG ++T AH+SLI  N       L++TI L F F   
Sbjct: 129 VGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLYMTIALSFLFLGG 188

Query: 501 QAIDYXESFFYNC**NLWDPFFSXXQGFHG 590
           QA +Y  + F     +++   F    G HG
Sbjct: 189 QAYEYWNAPF-TISDSVYGASFYFATGLHG 217


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = -3

Query: 367 NKGIWNGLNGVILEGGHILPISIFGDNLLWKKAQKNXXXXXXXXXXXXXXXIGNPLFTKI 188
           N GIW  +  V++   ++L +  FG+   W  A K                 G P+  KI
Sbjct: 158 NVGIWVAVFLVVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCIVITSGGTPVHHKI 217

Query: 187 VCLPWYVP 164
               W  P
Sbjct: 218 GFHYWRDP 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,223
Number of Sequences: 5004
Number of extensions: 28537
Number of successful extensions: 53
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)