Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0348
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo...   104   1e-23
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   1.7  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   5.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.0  

>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
           Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score =  104 bits (249), Expect = 1e-23
 Identities = 50/129 (38%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
 Frame = +3

Query: 210 NRESETSSRCSIGLLRAKG---VLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 380
           NR ++ + R  +G+L  +    V++V+NS+A+PF+ED+K+ SVWFLDH+++E+M  MFKK
Sbjct: 32  NRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKK 91

Query: 381 VNRQGKSCWLVHTGPKLHQNDIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKY 560
           +N   K     HTGP+L  +D+ +N  +++Y PN  LVIID   K +     A     + 
Sbjct: 92  INANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEI 151

Query: 561 PDDXYPTXR 587
            DD   + R
Sbjct: 152 EDDGSKSSR 160


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 25  MNNNFVI*NRTATNPEYISKNTYVKIIKMPSQE 123
           + NNFV  N  A   E   K TY+ +  MPS E
Sbjct: 49  LKNNFVEENDNAVLKEEPGKYTYMSLFTMPSTE 81


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +1

Query: 310 TTKTNLSGSLTMIT 351
           TTK+NLSG+L M+T
Sbjct: 182 TTKSNLSGNLNMVT 195


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 333 TRQICLCRLHQTGLRSCSIRLRHPWLST 250
           T++  +      G+R C +++ HPWL +
Sbjct: 753 TKKCAMTTSRVLGVRICGMQVWHPWLQS 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,721
Number of Sequences: 5004
Number of extensions: 42305
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)