Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0348
         (631 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    72   3e-13
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23...    31   1.00 
03_02_0281 - 7069847-7069876,7070152-7070218,7071320-7071445,707...    29   3.0  
01_05_0494 + 22701994-22703117,22703526-22703580                       29   4.0  
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108...    29   4.0  
02_02_0241 - 8204430-8205398                                           28   7.0  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    27   9.3  

>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 30/62 (48%), Positives = 47/62 (75%), Gaps = 3/62 (4%)
 Frame = +3

Query: 210 NRESETSSRCSIGLL---RAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 380
           NR +  + +  +G+L    ++G +DV+NS+AVPF+EDDKD  +WFLDH+Y E+M+ MFK+
Sbjct: 32  NRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKR 91

Query: 381 VN 386
           +N
Sbjct: 92  IN 93


>05_01_0034 -
           228939-229028,229117-229230,229309-229430,229827-230056,
           230458-230537,230641-230859
          Length = 284

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 243 IGLLRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 386
           +G +   G + V NS+ VP +E     +   LD +Y  NMY    KVN
Sbjct: 48  LGSVLPDGTVHVRNSYVVPHNESPDQVA---LDIEYHHNMYASHHKVN 92


>03_02_0281 -
           7069847-7069876,7070152-7070218,7071320-7071445,
           7071727-7071916,7072008-7072110
          Length = 171

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 337 RNQTDLSLSSSSNGTAKLFDTSKTPLALNNPIEHRLLVSDSRFYSC 200
           RN  D SL S  +G    F        L  P++ RLL  DSR +SC
Sbjct: 97  RNFKDKSLRSPLSGPEAFFSEEMQD-KLWGPLDMRLLPVDSRIFSC 141


>01_05_0494 + 22701994-22703117,22703526-22703580
          Length = 392

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 390 QGKSCWLVHTGPKLHQ 437
           QG  CW  H GP+L+Q
Sbjct: 182 QGSKCWFPHRGPRLNQ 197


>01_04_0136 +
           16506747-16506982,16507128-16507728,16510443-16510842,
           16513595-16513709,16513776-16514352
          Length = 642

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 470 TPNXLI*XYVILMKFRSSVDQPTTFSLAVNLFEHTIH 360
           TPN  I  YV+L  F + +D+ + F L +   E   H
Sbjct: 106 TPNLSIPDYVLLQHFHTGLDKESAFHLNITAGESFFH 142


>02_02_0241 - 8204430-8205398
          Length = 322

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 346 SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALNNPIEHRLLVSDSR 212
           +WS +   L  ++S +G+ +LFD +  P    NP+  RLL   +R
Sbjct: 72  AWSESHESLCAAASGDGSVRLFDVALPP--AQNPV--RLLREHAR 112


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -1

Query: 346 SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALNNPIEHRLLVSDSRFYSCG 197
           SW +    L     S+GT     TS   + +     H LLV DS  YSCG
Sbjct: 81  SWKKVLRFLQSVEQSSGTVH---TSSGNMQVATGRYHTLLVHDSSVYSCG 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,765,457
Number of Sequences: 37544
Number of extensions: 262170
Number of successful extensions: 511
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)