Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0348
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               89   3e-18
SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)                 28   5.4  
SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)          28   5.4  

>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 55/111 (49%), Positives = 63/111 (56%)
 Frame = +3

Query: 255 RAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLH 434
           R KGVLDV+N FAVPFDEDD+D++VWFLDHDYLENMY MFKKVN        +     LH
Sbjct: 45  RRKGVLDVANCFAVPFDEDDRDQNVWFLDHDYLENMYAMFKKVNVGFVDMSFI----VLH 100

Query: 435 QNDIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKYPDDXYPTXR 587
             DI         C    LVIIDA  K L    +A     +  DD  PT +
Sbjct: 101 PYDIA--------CV-QVLVIIDAKPKDLRLPTDAYVAVEEVHDDGTPTTK 142



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 187 DHFNRMSKIGNQKRVVGVLLG 249
           DHFNRM K+G+QKRVVGVLLG
Sbjct: 23  DHFNRMGKVGSQKRVVGVLLG 43


>SB_22225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 HHESNHQSGGSSVSVAQCRGPF*PHE*NRESETSSRCSI 245
           HH+  ++ G   V++   RGP   H+   E  T+SR ++
Sbjct: 28  HHDWTYEGGHDIVTIGPTRGPRHHHDWTYEGSTTSRLNL 66


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 326  RFVFVVFIKRDCEAVRYV*DTLGSQQPNRTPTTR 225
            RF+    I+R C+++R   D+LGS  P+R  + R
Sbjct: 1924 RFINEEIIERKCQSLRAKWDSLGSSIPDRVDSLR 1957


>SB_24409| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
          Length = 439

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 411 PANNFFPGG*PF*TYHTCSLSNHGQGTRQICLCRLHQTGLRSCSI 277
           P NNF+  G P     TC+  +    TR  C+  +++T  R  SI
Sbjct: 84  PLNNFYNTGYPDTQNTTCTTGDFCFTTRTTCVLLVYRTCFRKASI 128


>SB_21709| Best HMM Match : F5_F8_type_C (HMM E-Value=8.7e-21)
          Length = 532

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 285 SFAVPFDEDDKDKSVW--FLDHDYLENMYGMFKKVNRQ 392
           S++V F ED   K  W  +++ DYL+   G   KVN++
Sbjct: 482 SYSVSFSED---KKTWQKYVERDYLQKAMGAITKVNQR 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,282,207
Number of Sequences: 59808
Number of extensions: 313124
Number of successful extensions: 618
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)