Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0348
(631 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 149 6e-36
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 149 6e-36
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 149 8e-36
U94855-1|AAD03467.1| 357|Homo sapiens translation initiation fa... 43 8e-04
CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein. 43 8e-04
BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation ... 43 8e-04
BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation ... 43 8e-04
AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens ... 43 8e-04
AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein. 38 0.029
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 149 bits (362), Expect = 6e-36
Identities = 71/109 (65%), Positives = 79/109 (72%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K VLDVSNSFAVPFDEDDKD SVWFLDHDYLENMYGMFKKVN + + HTGPKLH+N
Sbjct: 45 KKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKN 104
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKYPDDXYPTXR 587
DI +NE ++RYCPNS LVIID K L EA + DD PT +
Sbjct: 105 DIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 153
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +1
Query: 187 DHFNRMSKIGNQKRVVGVLLGC*EPRVS*TYRTASQSRLMKTTKTNLSGSLTMIT---*R 357
DHFNR+ K+GNQKRVVGVLLG + +V S S + + + S+ +
Sbjct: 21 DHFNRIGKVGNQKRVVGVLLGSWQKKV----LDVSNSFAVPFDEDDKDDSVWFLDHDYLE 76
Query: 358 TCMVCSKRLTAREKVVGW 411
K++ ARE++VGW
Sbjct: 77 NMYGMFKKVNARERIVGW 94
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 149 bits (362), Expect = 6e-36
Identities = 71/109 (65%), Positives = 79/109 (72%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K VLDVSNSFAVPFDEDDKD SVWFLDHDYLENMYGMFKKVN + + HTGPKLH+N
Sbjct: 45 KKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKN 104
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKYPDDXYPTXR 587
DI +NE ++RYCPNS LVIID K L EA + DD PT +
Sbjct: 105 DIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSK 153
Score = 46.4 bits (105), Expect = 8e-05
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +1
Query: 187 DHFNRMSKIGNQKRVVGVLLGC*EPRVS*TYRTASQSRLMKTTKTNLSGSLTMIT---*R 357
DHFNR+ K+GNQKRVVGVLLG + +V S S + + + S+ +
Sbjct: 21 DHFNRIGKVGNQKRVVGVLLGSWQKKV----LDVSNSFAVPFDEDDKDDSVWFLDHDYLE 76
Query: 358 TCMVCSKRLTAREKVVGW 411
K++ ARE++VGW
Sbjct: 77 NMYGMFKKVNARERIVGW 94
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 149 bits (361), Expect = 8e-36
Identities = 71/109 (65%), Positives = 79/109 (72%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K VLDVSNSFAVPFDEDDKD SVWFLDHDYLENMYGMFKKVN + + HTGPKLH+N
Sbjct: 45 KKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKN 104
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKYPDDXYPTXR 587
DI +NE ++RYCPNS LVIID K L EA + DD PT +
Sbjct: 105 DIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEDQDDGTPTSK 153
Score = 45.6 bits (103), Expect = 1e-04
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +1
Query: 187 DHFNRMSKIGNQKRVVGVLLGC*EPRVS*TYRTASQSRLMKTTKTNLSGSLTMIT---*R 357
DHFNR+ K+GNQKRVVGVLLG + +V S S + + + S+ +
Sbjct: 21 DHFNRIVKVGNQKRVVGVLLGSWQKKV----LDVSNSFAVPFDEDDKDDSVWFLDHDYLE 76
Query: 358 TCMVCSKRLTAREKVVGW 411
K++ ARE++VGW
Sbjct: 77 NMYGMFKKVNARERIVGW 94
>U94855-1|AAD03467.1| 357|Homo sapiens translation initiation
factor 3 47 kDa subunit protein.
Length = 357
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ TG + ++
Sbjct: 126 KHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEH 182
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 183 SVLIHEYYSREAPNPIHLTVDTSLQ 207
>CR456959-1|CAG33240.1| 357|Homo sapiens EIF3S5 protein.
Length = 357
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ TG + ++
Sbjct: 126 KHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEH 182
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 183 SVLIHEYYSREAPNPIHLTVDTSLQ 207
>BT006894-1|AAP35540.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ TG + ++
Sbjct: 126 KHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEH 182
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 183 SVLIHEYYSREAPNPIHLTVDTSLQ 207
>BC000490-1|AAH00490.1| 357|Homo sapiens eukaryotic translation
initiation factor 3, subunit 5 epsilon, 47kDa protein.
Length = 357
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ TG + ++
Sbjct: 126 KHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEH 182
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 183 SVLIHEYYSREAPNPIHLTVDTSLQ 207
>AK095574-1|BAC04577.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ38255 fis, clone FCBBF3001020, highly similar to
EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 5. ).
Length = 350
Score = 43.2 bits (97), Expect = 8e-04
Identities = 23/85 (27%), Positives = 46/85 (54%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+VP +E + + +V D ++ +NMY + KKV+ TG + ++
Sbjct: 119 KHSVEVTNCFSVPHNESEDEVAV---DMEFAKNMYELHKKVSPNELILGWYATGHDITEH 175
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 176 SVLIHEYYSREAPNPIHLTVDTSLQ 200
>AF354444-1|AAK18634.1| 348|Homo sapiens IFP38 protein.
Length = 348
Score = 37.9 bits (84), Expect = 0.029
Identities = 21/85 (24%), Positives = 44/85 (51%)
Frame = +3
Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQN 440
K ++V+N F+V ++E D+ +D ++ +NMY + KKV+ G + ++
Sbjct: 116 KHSVEVTNCFSVSYNESDEV----VVDMEFAKNMYELHKKVSPNELILGWYAAGHDITEH 171
Query: 441 DIXLNEXIRRYCPNSXLVIIDANLK 515
+ ++E R PN + +D +L+
Sbjct: 172 SVLIHEYYSREAPNPIHLTVDTSLQ 196
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,415,623
Number of Sequences: 237096
Number of extensions: 1525534
Number of successful extensions: 2383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2377
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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