Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0348
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...   133   9e-32
U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    31   0.90 
AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical ...    29   2.1  
Y12543-1|CAA73142.1|  897|Caenorhabditis elegans VPS34 homologue...    27   8.4  

>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score =  133 bits (322), Expect = 9e-32
 Identities = 62/112 (55%), Positives = 77/112 (68%)
 Frame = +3

Query: 243 IGLLRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTG 422
           +G ++    LD+ NSFAVPFDEDDKDKS WFLD DYLE+MYGMF KV  + K     HTG
Sbjct: 72  LGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMYGMFYKVAAKEKIVGWYHTG 131

Query: 423 PKLHQNDIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKYPDDXYP 578
           PKLH+NDI +NE ++R+CPN  LVIIDA  K +    EA  + ++  DD  P
Sbjct: 132 PKLHKNDIAINEQLKRFCPNPVLVIIDAEPKNIGLPTEAYIEVQEVHDDGTP 183



 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/75 (33%), Positives = 37/75 (49%)
 Frame = +1

Query: 187 DHFNRMSKIGNQKRVVGVLLGC*EPRVS*TYRTASQSRLMKTTKTNLSGSLTMIT*RTCM 366
           DHFNR+SK  + KRVVGVLLG  +   +     +      +  K   +  L M    +  
Sbjct: 53  DHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKSTWFLDMDYLESMY 112

Query: 367 VCSKRLTAREKVVGW 411
               ++ A+EK+VGW
Sbjct: 113 GMFYKVAAKEKIVGW 127


>U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical
           protein C25G6.3 protein.
          Length = 532

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 321 KSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLH 434
           +S + L HDY E ++GM KK  + G    L+  G   H
Sbjct: 274 ESGFHLCHDYFEQLFGMLKKTEQLGSKNHLITDGLHCH 311


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 261 KGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVN 386
           KG + V+N FA+PF+E + D  +   D  + + M    KK +
Sbjct: 47  KGSIQVTNCFAIPFNESNDDLEI---DDQFNQQMISALKKTS 85


>AC024818-3|AAF60780.2|  453|Caenorhabditis elegans Hypothetical
           protein Y54H5A.1 protein.
          Length = 453

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 346 SWSRNQTDLSLSSSSNGTAKLFDTSKTP 263
           +WS  +T L  S S++G+ KL+DT   P
Sbjct: 282 AWSPTETGLLASCSADGSIKLWDTRSAP 309


>Y12543-1|CAA73142.1|  897|Caenorhabditis elegans VPS34 homologue
           protein.
          Length = 897

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +3

Query: 216 ESETSSRCSIGLLRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQG 395
           +S+ S     G+L++ GV+DV  + +   D   K    W     + + ++ +FK+V RQ 
Sbjct: 128 QSKLSMFSKRGILKS-GVIDVQMNVSTTPDPFVKQPETWKYSDAWGDEIHLLFKQVTRQS 186

Query: 396 K 398
           +
Sbjct: 187 R 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,549
Number of Sequences: 27780
Number of extensions: 241016
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)