Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0348
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 107 6e-24
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 105 3e-23
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 39 0.002
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof... 31 0.83
At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cycl... 30 1.5
At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical t... 29 3.4
At4g16195.1 68417.m02458 self-incompatibility protein-related si... 29 3.4
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 28 5.9
At3g47330.1 68416.m05144 hypothetical protein contains Pfam prof... 27 7.8
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 107 bits (257), Expect = 6e-24
Identities = 51/107 (47%), Positives = 73/107 (68%), Gaps = 3/107 (2%)
Frame = +3
Query: 210 NRESETSSRCSIGLL---RAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 380
NR ++ SS+ +G+L ++GV+DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+ MFK+
Sbjct: 32 NRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKR 91
Query: 381 VNRQGKSCWLVHTGPKLHQNDIXLNEXIRRYCPNSXLVIIDANLKIL 521
+N + TGPKL +ND+ ++ Y PN LVIID K L
Sbjct: 92 INAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKEL 138
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 105 bits (251), Expect = 3e-23
Identities = 52/137 (37%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Frame = +3
Query: 210 NRESETSSRCSIGLL---RAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKK 380
NR ++ +S+ +G+L ++G +DV+NS+AVPF+EDDKD S+WFLDH+Y E+M+ MFK+
Sbjct: 32 NRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKR 91
Query: 381 VNRQGKSCWLVHTGPKLHQNDIXLNEXIRRYCPNSXLVIIDANLKILVYXLEASXQXRKY 560
+N + TGPKL +ND+ ++ Y PN LVIID K L +A +
Sbjct: 92 INAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEV 151
Query: 561 PDDXYPTXRDLXTMVPS 611
++ + + VP+
Sbjct: 152 KENATQKSQQVFVHVPT 168
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/87 (27%), Positives = 39/87 (44%)
Frame = +3
Query: 243 IGLLRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTG 422
+G + G +D+ NS+AVP +E +V D DY NM KVN + TG
Sbjct: 57 LGSILPDGTVDIRNSYAVPHNESSDQVAV---DIDYHHNMLASHLKVNSKETIVGWYSTG 113
Query: 423 PKLHQNDIXLNEXIRRYCPNSXLVIID 503
++ +++ R PN + +D
Sbjct: 114 AGVNGGSSLIHDFYAREVPNPIHLTVD 140
>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 735
Score = 30.7 bits (66), Expect = 0.83
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +3
Query: 315 KDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLV 413
K+++VWF HD ++++ M ++ N Q + W++
Sbjct: 235 KEEAVWFKRHDQFKHIFHMPQEPNHQTQGMWVL 267
>At3g11520.1 68416.m01404 cyclin, putative (CYC2) similar to cyclin
[Arabidopsis thaliana] GI:1360646; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain; identical to cDNA cyclin box
(cyc2) partial cds GI:456019
Length = 414
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 267 VLDV-SNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVHTGPKLHQ 437
VLD S + + D D DK +Y+E+MY +K+V + K +HT P++ +
Sbjct: 131 VLDARSKAASKTLDIDYVDKENDLAAVEYVEDMYIFYKEVVNESKPQMYMHTQPEIDE 188
>At4g26700.1 68417.m03848 fimbrin-like protein (FIM1) identical to
fimbrin-like protein (ATFIM1) [Arabidopsis thaliana]
GI:2905893
Length = 687
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 364 MVCSKRLTAREKVVGWSTLDLNFIRMTXH 450
M C + LTA E V G STL+L F+ H
Sbjct: 340 MNCKRYLTAEEIVEGSSTLNLAFVAQIFH 368
>At4g16195.1 68417.m02458 self-incompatibility protein-related
similar to S1 self-incompatibility protein [Papaver
rhoeas] GI:452430
Length = 161
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = -1
Query: 379 FLNIPYMFSK*SWSRNQTDLSLSSSSNGTAKLFDTSKTPLALNNPIEHRL 230
F+ I ++ +K S + ++ D+ + + + T +F TSK + +NN + ++L
Sbjct: 11 FILIIFITTKLSQADHKNDIPVPNDPSSTNSVFPTSKRTVEINNDLGNQL 60
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 237 CSIGLLRAKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLVH 416
C IG+ R + V ++ NSF + +D S LD +LE ++KKV
Sbjct: 61 CVIGVQRGRTV-EIFNSFELLYDP-----STQTLDRSFLEKKQELYKKVFPDFYILGWYS 114
Query: 417 TGPKLHQNDIXLNEXI 464
TG ++D+ +++ +
Sbjct: 115 TGSDAEESDMHIHKAL 130
>At3g47330.1 68416.m05144 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 664
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 294 VPFDEDDKDKSVWFLDHDYLENMYGMFKKVNRQGKSCWLV 413
V F E ++ WF +HD ++++ M K+ N + W++
Sbjct: 171 VEFIETLDEELKWFRNHDQFKHIFHMPKEPNHMIQGMWML 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,151,357
Number of Sequences: 28952
Number of extensions: 221954
Number of successful extensions: 532
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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