Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0344
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 129 2e-31
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 122 2e-29
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 75 6e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 66 3e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 7e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 58 9e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 56 2e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 55 5e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 55 5e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 51 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 6e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 1e-06
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 47 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 42 4e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 7e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 41 9e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 41 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 39 3e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 6e-04
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 37 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.023
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 32 0.040
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.16
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.86
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 28 0.86
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.1
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.0
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.0
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 129 bits (312), Expect = 2e-31
Identities = 60/77 (77%), Positives = 70/77 (90%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
MP + RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQKVV+A
Sbjct: 51 MPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVAL 110
Query: 435 GDHLNAKCHACIGGTNV 485
GD +N +CHACIGGT V
Sbjct: 111 GDLMNVECHACIGGTLV 127
Score = 77.0 bits (181), Expect = 1e-15
Identities = 32/46 (69%), Positives = 42/46 (91%)
Frame = +1
Query: 118 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAI
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAI 50
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 122 bits (295), Expect = 2e-29
Identities = 57/73 (78%), Positives = 65/73 (89%)
Frame = +3
Query: 267 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHL 446
+GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV+A GDH+
Sbjct: 57 KGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM 116
Query: 447 NAKCHACIGGTNV 485
N +CHACIGGT+V
Sbjct: 117 NVQCHACIGGTSV 129
Score = 57.6 bits (133), Expect = 9e-10
Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Frame = +1
Query: 118 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAI 52
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 74.9 bits (176), Expect = 6e-15
Identities = 35/74 (47%), Positives = 48/74 (64%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q +V G H
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 444 LNAKCHACIGGTNV 485
+N K GGT +
Sbjct: 139 MNVKVMVTTGGTTL 152
Score = 43.6 bits (98), Expect = 2e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 70 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 237
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 238 IQQRAICLA 264
IQ+ +I +A
Sbjct: 70 IQEESIPIA 78
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 66.1 bits (154), Expect = 3e-12
Identities = 30/61 (49%), Positives = 45/61 (73%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHLNA 452
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+RELA+QI VV G +
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 453 K 455
K
Sbjct: 214 K 214
Score = 44.0 bits (99), Expect = 1e-05
Identities = 18/35 (51%), Positives = 29/35 (82%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICL 261
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPL 147
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.0 bits (134), Expect = 7e-10
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHLNA 452
RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTRELA QI + A G +
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGV 143
Query: 453 KCHACIGGTNV 485
+ +GG ++
Sbjct: 144 RSVVIVGGMDM 154
Score = 31.5 bits (68), Expect = 0.070
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +1
Query: 22 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 201
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 202 GIYAYGFEKPSAIQQRAI 255
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 57.6 bits (133), Expect = 9e-10
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
++GR+ I A++G+GKTA F++ I+++ ALIL PTRELA QI + A G +
Sbjct: 42 LEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGAN 101
Query: 444 LNAKCHACIGGTNV 485
LN K +GG ++
Sbjct: 102 LNLKHALIVGGMDM 115
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 56.4 bits (130), Expect = 2e-09
Identities = 35/80 (43%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRELAQQIQKVV 425
++G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTRELAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Query: 426 IAXGDHLNAKCHACIGGTNV 485
+ L A C I NV
Sbjct: 109 ----EKLTAFCSKHIRFINV 124
Score = 34.7 bits (76), Expect = 0.007
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
+TF D NL L R I+ FEKP+++Q I LA
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLA 48
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 55.2 bits (127), Expect = 5e-09
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
I G DV+ QA+SG GKTA F +S LQQI+ E L+L TRELA QI+ +
Sbjct: 86 ILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKY 145
Query: 444 L-NAKCHACIGGTNV 485
L + + GG N+
Sbjct: 146 LPDVRTAVFYGGINI 160
Score = 32.7 bits (71), Expect = 0.030
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 55.2 bits (127), Expect = 5e-09
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRELAQQIQKVVIAXG 437
++GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P RELA Q KVV
Sbjct: 104 LEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFS 163
Query: 438 DHLNAKCHACIGGTNV 485
+ + A +GG ++
Sbjct: 164 KGTDLRSVAIVGGVSL 179
Score = 33.9 bits (74), Expect = 0.013
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +1
Query: 1 NSARG*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPG--TLDTDWDQVVETFDD 174
NS + + +++ + + +N +D G+Y ++ T + F
Sbjct: 14 NSLKAFPVDIATDNQKDKHENVGENVSDEDDGNYIASKLLESNRRTKGKKGNGKASNFQS 73
Query: 175 MNLKEELLRGIYAYGFEKPSAIQQRAICL 261
M L + LLR I+ GF+ P+ IQ++ I L
Sbjct: 74 MGLNQTLLRAIFKKGFKAPTPIQRKTIPL 102
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 50.8 bits (116), Expect = 1e-07
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAXGD 440
G+D++ A +G+GKTA F + IL+++ + + LIL PTRELA Q V
Sbjct: 296 GKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIAS 355
Query: 441 HLNAKCHACIGGTNV 485
+ CIGG ++
Sbjct: 356 FTDIMVCLCIGGLSL 370
Score = 33.9 bits (74), Expect = 0.013
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 163 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
+F MNL +L+G+ GFE P+ IQ + I LA
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLA 293
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 6e-07
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRELAQQIQKVVIA 431
++GRD++ A++G+GKT F + +++ + TS+ AL+++PTRELA Q + ++
Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133
Query: 432 XGDHLNAKCHACIGGTN 482
G + IGG N
Sbjct: 134 IGRLHSFSAGLIIGGNN 150
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 47.6 bits (108), Expect = 1e-06
Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRELAQQI 413
G D+I +A +G+GKT F I IL+ + + QAL++APTRELA QI
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 47.2 bits (107), Expect = 1e-06
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--SIRECQ------ALILAPTRELAQQIQK 419
+Q +D+I A++G+GKTA F I ++ I + E A++LAPTRELAQQIQ
Sbjct: 284 LQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQV 343
Query: 420 VVIAXGDHLNAKCHACIGG 476
+ L +C + +GG
Sbjct: 344 EGNKFAEPLGFRCVSVVGG 362
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRELAQQIQK 419
RD++A A +G+GKT + ILQ++ + +A+I+APTREL +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.5 bits (93), Expect = 7e-05
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRELAQQIQKVVIAX 434
+ GRDV+ A++G+GKT F I LQ ++ + + L+++PTRELA Q + + +
Sbjct: 200 LAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSL 259
Query: 435 GDHLNAKCHACIGG 476
N K GG
Sbjct: 260 IQGTNLKAVVVYGG 273
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 41.1 bits (92), Expect = 9e-05
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVV 425
P + GRDV+ A++G+GKT F +I +L + R +I++PTRELA QI V
Sbjct: 122 PLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQIFGVA 181
Query: 426 IAXGDHLNAKCHACIGGTN 482
+ + IGG N
Sbjct: 182 KELLKYHHQTFGIVIGGAN 200
Score = 32.7 bits (71), Expect = 0.030
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291
+E F D+ L E + + I GFE + IQ+R+I LA +D + + K
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAK 134
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 40.7 bits (91), Expect = 1e-04
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = +3
Query: 234 CNPATRNMPCIQGRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALILAPT 392
C PA N +D +AQ+G+GKT + + I+Q++ T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 393 RELAQQIQKV 422
REL QQI V
Sbjct: 226 RELCQQIYNV 235
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKV 422
++ +D++ +A +G+GKT + + ++ DT ALI+APTRELA QI V
Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 39.1 bits (87), Expect = 3e-04
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +3
Query: 255 MPCI-QGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQIQ 416
+P I GRDVI A++G+GKT F + + + I ++ + A+I+ PTRELA QI
Sbjct: 449 IPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIF 508
Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
+ LN + GG +
Sbjct: 509 RECKPFLKLLNIRACCAYGGAPI 531
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 142 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQIQK 419
G DV A +G+GKT ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 428
+ GRD++ + +G+GKT ++ + + I+ L+LAPTRELA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 429 AXGDHLNAKCHACIGG 476
G + + C+ G
Sbjct: 217 KFGKSSRIR-NTCVYG 231
Score = 28.3 bits (60), Expect = 0.65
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 252
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.1 bits (72), Expect = 0.023
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +3
Query: 276 DVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRELAQQI 413
+ + QA++GTGKT F + + + + + ++IL+PTRELA QI
Sbjct: 78 NAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 32.3 bits (70), Expect = 0.040
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 20/80 (25%)
Frame = +3
Query: 240 PATRN-MPCI-QGRDVIAQAQSGTGKTATFSISIL--------------QQIDTSIRECQ 371
P +N +P + GRD++A AQ+G+GKTA F IL Q R +
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRK 253
Query: 372 A----LILAPTRELAQQIQK 419
A LILAPTREL QI +
Sbjct: 254 AYPTTLILAPTRELVCQIHE 273
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 30.3 bits (65), Expect = 0.16
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 225 KTFCNPATRNMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELA 404
KT+ + A G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 405 QQIQKVVI 428
Q +K +I
Sbjct: 370 QDQKKSLI 377
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 336 LQQIDTSIRECQALILAPTRELAQQIQK 419
LQ I I++CQ L PT++L Q +K
Sbjct: 201 LQGIKEYIKKCQLTELDPTQQLLTQSRK 228
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.86
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 130 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 222
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.9 bits (59), Expect = 0.86
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +1
Query: 136 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAICLASKDAMLSLKPSQELE 309
DTDWD +V + D++L+ RGI A G + + Q+ A ++SK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 310 KLLLSLYRFYNKS 348
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.1
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 300 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 416
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 107 DLREWTLGHLTPT 145
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 332 DSTTNRYKHS*MSSFDPGSHKRAGPTNSEG 421
D+ TNR + SSFD S P+N++G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 127 QGPFPEVHRNYLDPSMAHFWNPLANL 50
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 8.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIC----LASKDAMLSLKPSQELE 309
ET D ++ K GI +KP + QRAI +++K KP Q+L+
Sbjct: 2255 ETIDGLHRKRLNEEGITLEERQKPEILNQRAITVLNRVSNKLTGRDFKPQQQLD 2308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,958
Number of Sequences: 5004
Number of extensions: 45682
Number of successful extensions: 185
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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