Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0344
(485 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 127 6e-30
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 7e-29
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 73 1e-13
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 73 1e-13
SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069) 73 2e-13
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 66 2e-11
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 7e-10
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 60 1e-09
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 56 2e-08
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 55 3e-08
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 54 8e-08
SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 52 3e-07
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 1e-05
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 46 2e-05
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 44 7e-05
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 42 2e-04
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 38 0.006
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.031
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 33 0.12
SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.12
SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 31 0.67
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07) 29 2.7
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 29 2.7
SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42) 28 3.6
SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40) 28 3.6
SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.6
SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.6
SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 28 4.7
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 28 4.7
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 28 4.7
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 27 8.2
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 127 bits (306), Expect = 6e-30
Identities = 57/76 (75%), Positives = 69/76 (90%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXG 437
P ++GRDVIAQAQSGTGKTATFSIS+LQ IDT +RE QAL+L+PTRELA QIQKVV+A G
Sbjct: 30 PILKGRDVIAQAQSGTGKTATFSISVLQAIDTQLREPQALVLSPTRELANQIQKVVLALG 89
Query: 438 DHLNAKCHACIGGTNV 485
D+++ +CHACIGGTN+
Sbjct: 90 DYMSVQCHACIGGTNI 105
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +1
Query: 217 GFEKPSAIQQRAI 255
GFEKPSAIQQRAI
Sbjct: 16 GFEKPSAIQQRAI 28
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 123 bits (297), Expect = 7e-29
Identities = 60/86 (69%), Positives = 72/86 (83%), Gaps = 6/86 (6%)
Frame = +3
Query: 246 TRNMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE------CQALILAPTRELAQ 407
T+N + RDVIAQAQSGTGKTATF+ISILQ+IDT+ ++ CQAL+LAPTRELAQ
Sbjct: 114 TKNHYVLSARDVIAQAQSGTGKTATFAISILQEIDTNYKDKNGCDCCQALVLAPTRELAQ 173
Query: 408 QIQKVVIAXGDHLNAKCHACIGGTNV 485
QIQKVV+A GD+++ KCHACIGGTNV
Sbjct: 174 QIQKVVLALGDYMHVKCHACIGGTNV 199
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/43 (81%), Positives = 39/43 (90%)
Frame = +1
Query: 127 GTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
G ++WD+VVE+FDDMNLKE LLRGIYAYGFEKPSAIQQRAI
Sbjct: 52 GKRQSNWDEVVESFDDMNLKEALLRGIYAYGFEKPSAIQQRAI 94
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/74 (43%), Positives = 51/74 (68%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I G H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 444 LNAKCHACIGGTNV 485
+ A+ GGT++
Sbjct: 142 MGAQVMVTTGGTSL 155
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291
F+D LK ELL GI+ GF+KPS IQ+ +I LA +D + K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAK 92
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 72.9 bits (171), Expect = 1e-13
Identities = 32/74 (43%), Positives = 51/74 (68%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRD++A+A++GTGKTA + + +L++ DT+ QAL+L PTRELA Q ++ I G H
Sbjct: 82 LAGRDILARAKNGTGKTAAYLVPLLERTDTTKNCIQALVLVPTRELALQTSQICIELGKH 141
Query: 444 LNAKCHACIGGTNV 485
+ A+ GGT++
Sbjct: 142 MGAQVMVTTGGTSL 155
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291
F+D LK ELL GI+ GF+KPS IQ+ +I LA +D + K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAK 92
>SB_45527| Best HMM Match : DEAD (HMM E-Value=0.0069)
Length = 120
Score = 72.5 bits (170), Expect = 2e-13
Identities = 30/43 (69%), Positives = 39/43 (90%)
Frame = +3
Query: 357 IRECQALILAPTRELAQQIQKVVIAXGDHLNAKCHACIGGTNV 485
+RE QAL+L+PTRELA QIQKVV+A GD+++ +CHACIGGTN+
Sbjct: 1 LREPQALVLSPTRELANQIQKVVLALGDYMSVQCHACIGGTNI 43
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHLN 449
G D+IAQA+SGTGKT FS+ L+ + T Q +IL PTRE+A Q++ V+ A G H +
Sbjct: 50 GLDLIAQAKSGTGKTCVFSVIALENVITESNCIQIIILTPTREIAVQVKDVICAIGCHYD 109
Query: 450 A-KCHACIGGTNV 485
C IGG ++
Sbjct: 110 GLACKVFIGGISL 122
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICL 261
F + L LLRG+ GFEKPS IQ +AI L
Sbjct: 15 FHSLLLSPTLLRGLNEAGFEKPSPIQLKAIPL 46
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 60.5 bits (140), Expect = 7e-10
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Frame = +3
Query: 249 RNMPCIQ-GRDVIAQAQSGTGKTATFSISILQQIDTSIREC--QALILAPTRELAQQIQK 419
+ +P + G+DV+A A++G+GKTA F I + +++ T + +ALIL+PTRELA Q QK
Sbjct: 310 KTLPLVMDGKDVVAMARTGSGKTAAFLIPMFEKLQTHTAKVGIRALILSPTRELALQTQK 369
Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
+ G K +GG +V
Sbjct: 370 FIKELGRFTGLKSSVILGGDSV 391
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHLNA 452
+DVI A++G+GKT F++ ILQ + + + ALIL PTRELA QI + A G +
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNPQRLFALILTPTRELAFQISEQCEALGSGIGV 61
Query: 453 KCHACIGGTNV 485
KC +GG ++
Sbjct: 62 KCAVIVGGIDM 72
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 55.6 bits (128), Expect = 2e-08
Identities = 30/76 (39%), Positives = 44/76 (57%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXG 437
P +QGRD I A++G+GKTA F++ ILQ++ A++L PTRELA QI G
Sbjct: 40 PILQGRDCIGCAKTGSGKTAAFALPILQKLCDDPYGIFAVVLTPTRELAFQIADQFKVLG 99
Query: 438 DHLNAKCHACIGGTNV 485
+ K +GG ++
Sbjct: 100 RPIGLKEAVIVGGLDM 115
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 55.6 bits (128), Expect = 2e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +3
Query: 276 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
++IAQ+QSGTGKTA F +++L ++D + Q + L+PT ELA+Q KV A G H
Sbjct: 144 NMIAQSQSGTGKTAAFVLTMLSRVDATKPYPQVICLSPTYELARQTGKVAEAMGKH 199
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLASKDAMLSL 288
++F+++ L L RG+Y GF KPS IQ+ A+ + D +++
Sbjct: 103 KSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVNM 145
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 9/82 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 416
+Q RD+I A++G+GKTA F+I +L I + + + ALILAPTRELAQQI+
Sbjct: 136 LQNRDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILAPTRELAQQIE 195
Query: 417 KVVIAXGDHLNAKCHACIGGTN 482
+ ++ G L + + IGG +
Sbjct: 196 EEILKFGRPLGIRTVSVIGGAD 217
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 55.2 bits (127), Expect = 3e-08
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
GRD++A AQ+G+GKTA + + +L Q ++ R AL +APTRELA+QI
Sbjct: 516 GRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALCVAPTRELAKQIYIEARKF 575
Query: 435 GDHLNAKCHACIGGTNV 485
DH K C GG +V
Sbjct: 576 SDHTPIKVCVCYGGVSV 592
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 53.6 bits (123), Expect = 8e-08
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K +
Sbjct: 82 ILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKY 141
Query: 444 L-NAKCHACIGGTNV 485
+ N K GG N+
Sbjct: 142 MSNIKIAVFFGGINI 156
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
>SB_28853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 208
Score = 53.6 bits (123), Expect = 8e-08
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
I G D+I QA+SG GKTA F ++ LQQ++ + L++ TRELA QI K +
Sbjct: 82 ILGMDIICQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKY 141
Query: 444 L-NAKCHACIGGTNV 485
+ N K GG N+
Sbjct: 142 MSNIKIAVFFGGINI 156
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F D LK ELLR I GFE PS +Q I
Sbjct: 49 FRDFLLKPELLRAIVDCGFEHPSEVQHECI 78
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQ----QIDTSIRECQALILAPTRELAQQIQKVVIA 431
+ GRDV+ A++G+GKT F I I++ Q TS+ AL+++PTRELA Q +V++
Sbjct: 85 LSGRDVLGAAKTGSGKTLAFLIPIIETLWRQKWTSMDGLGALVISPTRELAYQTFEVLVK 144
Query: 432 XGDHLNAKCHACIGGTNV 485
G+ + IGG ++
Sbjct: 145 IGNKHDLSAGLIIGGKDL 162
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 46.4 bits (105), Expect = 1e-05
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFS----ISILQQIDTSIRECQ-ALILAPTRELAQQIQKVVI 428
+ GRD+I A++G+GKTA F + I+ Q + + + LI APTREL QQI
Sbjct: 552 LSGRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICAPTRELCQQIYTEAR 611
Query: 429 AXGDHLNAKCHACIGGTN 482
G N A GG N
Sbjct: 612 RFGKAYNIHVVAVFGGGN 629
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/54 (42%), Positives = 39/54 (72%), Gaps = 6/54 (11%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQI-DTSI-----RECQALILAPTRELAQQI 413
G DVI QA++GTGKT +F++ +++++ D + R + L++APTRELA+Q+
Sbjct: 110 GEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAPKVLVMAPTRELAKQV 163
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI------DTSIREC---QALILAPTRELAQQIQ 416
I GRDV+A AQ+G+GKTA F + ++ + +S E QA+ +APTRELA QI
Sbjct: 746 IAGRDVMACAQTGSGKTAAFLLPVMTSMMNAGLTSSSFSETQTPQAMCIAPTRELANQIY 805
Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
+ C GG +V
Sbjct: 806 LEARKFAHGTMLRPVVCYGGVSV 828
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQ 410
+ G+DV A A +GTGKTA F + IL+++ T + L++ PTRELA Q
Sbjct: 45 LMGKDVCACAATGTGKTAAFMLPILERLLYRPTQSPAIRVLVITPTRELAIQ 96
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 43.6 bits (98), Expect = 9e-05
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 19/87 (21%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDT--------------SIRECQ-----ALILAPTR 395
RD+I A++G+GKT F I I+Q I+ S E Q ALI+APTR
Sbjct: 169 RDIIGAAETGSGKTLAFGIPIIQHIEAYKKRKAEQSPSDKESDLESQGYPLLALIMAPTR 228
Query: 396 ELAQQIQKVVIAXGDHLNAKCHACIGG 476
ELA Q++ ++ + + K A +GG
Sbjct: 229 ELALQVKDHLVKAAKYTSVKVAAIVGG 255
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +3
Query: 249 RNMPCIQ-GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQ 410
+++ C+ GRD+I A++G+GKT +S+ + + T ALIL PTREL QQ
Sbjct: 101 QSLSCVMSGRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALILTPTRELMQQ 160
Query: 411 I 413
+
Sbjct: 161 V 161
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 142 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-CLASKDAMLSLKPSQELEKLL 318
D + +E+F D+NL EL + F+ P+ IQ +++ C+ S ++ L + + L
Sbjct: 66 DCPKPIESFHDLNLPPELSTYLAKKNFQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLA 125
Query: 319 LSL 327
SL
Sbjct: 126 YSL 128
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVV 425
P ++GRD++ A++G+GKT F + +L ++ R +I++PTREL+ Q V
Sbjct: 605 PLLKGRDLLGAAKTGSGKTLAFLVPVVELLYKLQFKTRNGTGVIIISPTRELSLQTYGVA 664
Query: 426 IAXGDHLNAKCHACIGGTN 482
H N +GG N
Sbjct: 665 RDLLKHHNFTYGIIMGGVN 683
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 37.5 bits (83), Expect = 0.006
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 375 LILAPTRELAQQIQKVVIAXGDHLNAKCHACIGG 476
L+L PTRELAQQ+Q+V + G H + GG
Sbjct: 136 LVLCPTRELAQQVQEVAYSVGKHCKLRSTCIYGG 169
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 35.1 bits (77), Expect = 0.031
Identities = 17/32 (53%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Frame = +3
Query: 255 MPCIQG-RDVIAQAQSGTGKTATFSISILQQI 347
+P ++G RD++A AQ+G+GKTA F I IL +I
Sbjct: 906 IPIVKGKRDLMACAQTGSGKTAAFLIPILSRI 937
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F+D++L E LL + G++KP+ +Q+ AI
Sbjct: 877 FEDVDLGEILLHNVGLAGYKKPTPVQKYAI 906
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTS---------IRECQALILAPTRELAQQIQ 416
I VI AQ+G+GKT + ++ ++ ++ +A I+ P RELA QI
Sbjct: 413 IHRHHVICAAQTGSGKTLAYLAPLVHRLREDEERHGILARLKRPRACIVVPARELATQIL 472
Query: 417 KVVIAXGDHLNAKCHACIGG 476
K + H + IGG
Sbjct: 473 KTAKSLCHHARFRSVGLIGG 492
>SB_33720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 33.1 bits (72), Expect = 0.12
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 37 ERRSEDWPEDSKNGPSKDQGSYD---GPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGI 207
E+ +E+ E +K + D+G GPPG GT D VVE DD K E G
Sbjct: 19 EKTAEEMRELAKKAEACDRGVRAILLGPPGSGKGTQLVSDDLVVELIDDNLTKPECQNGW 78
Query: 208 YAYGFEKPSAIQQRAICLASK 270
GF + A ++ L K
Sbjct: 79 LLDGFPRTVAQAEKLDGLLEK 99
>SB_3229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 444 LNAKCHACIGGTNV 485
++ KCHACIGGTNV
Sbjct: 1 MHVKCHACIGGTNV 14
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 413
+ ++ ++++GTGK+ F +L + R +I+ PTRELA Q+
Sbjct: 198 KSLLIKSETGTGKSLVF---LLPSVQDPGRGYGTIIVVPTRELASQM 241
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 30.7 bits (66), Expect = 0.67
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 360 RECQALILAPTRELAQQIQKVVIAXGDHLNAKCHACIGGTNV 485
R+ A+++ PTRELA QI + N +C GGT +
Sbjct: 143 RDMIAIVMTPTRELAIQIHRECKKFCKPNNLRCVCVYGGTGI 184
>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1750
Score = 30.3 bits (65), Expect = 0.88
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = -2
Query: 361 RMLVSICCRIDIEKVAVFPVPDWA*AITSRPWMQGILRVAGLQKVFQNHR-RICLSTILL 185
R+ VS+ C ++ + FP+PD + RPW + +R L VF + + +
Sbjct: 652 RLNVSLSCP-ELSVMLRFPIPDLRPVVERRPWWKQAVRDESLLLVFSAFKFNTVVCSADP 710
Query: 184 *GSCHRRFRQLDP-SRCQVSQGPFPEVHRNYL 92
S RF+Q+D + P P +H + L
Sbjct: 711 AASYELRFQQMDGYYKESAGATPIPVMHSSPL 742
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 76 GPSKDQG-SYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRG 204
GP +QG S GPPG PG T W+ + N E LRG
Sbjct: 3363 GPKGEQGRSISGPPG-PPGAPGTSWNDSIVNGGLSNSLLESLRG 3405
>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 512
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 342 QIDTSIRECQALILAPTRELAQQIQKVVIAXGDHLNAKCHACI 470
Q D++++E IL ELA++IQK++ LN K AC+
Sbjct: 58 QGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACL 100
>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
Length = 532
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 365
+ G DV+A + SGT K + F ++++ D+ R+
Sbjct: 245 VNGSDVVANSSSGTVKRSLFLPEVMEENDSVFRD 278
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 19 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGP 111
+M Y SER P D P+ D GS D P
Sbjct: 1171 SMEYDSERHPYQAPADEMVNPNTDGGSRDNP 1201
>SB_31593| Best HMM Match : Ribonuclease_3 (HMM E-Value=6.30024e-42)
Length = 618
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 19 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 198
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 265 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 323
Query: 199 RG--IYA--YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLLLSLYRFYNK 345
++A +GF K + + + + L +D + +++ L+L + ++K
Sbjct: 324 NNNILFANQHGFRKNHSCETQ-LLLTVEDLARNTDNGGQIDMLILDFSKAFDK 375
>SB_30812| Best HMM Match : RVT_1 (HMM E-Value=1.2e-40)
Length = 325
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 19 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 198
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 199 RG--IYA--YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLLLSLYRFYNK 345
++A +GF K + + + + L +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQ-LLLTVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_11753| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 393
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 19 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 198
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 199 RG--IYA--YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLLLSLYRFYNK 345
++A +GF K + + + + L +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQ-LLLTVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_24534| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 423
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Frame = +1
Query: 19 NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELL 198
N SYSS + EDW + ++ P +G P P +L T +++E N+ E L
Sbjct: 83 NQSYSSGQLPEDWTK-AQVVPIFKKGVKHDPCNYRPVSLTTVLCKLMEHVIYKNIMEHLE 141
Query: 199 RG--IYA--YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLLLSLYRFYNK 345
++A +GF K + + + + L +D + +++ L+L + ++K
Sbjct: 142 NNNILFANQHGFRKNHSCETQ-LLLTVEDLARNTDNGGQIDMLILDFSKAFDK 193
>SB_44173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 61 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 192
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 71 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 111
>SB_30467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 61 EDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEE 192
+D N + D G+ D D GT+D D D V+ DD N +
Sbjct: 54 DDDGNIDNDDDGNIDND---DDGTIDNDDDGYVDNVDDDNFDND 94
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 258 PCIQGRD-VIAQAQSGTGKTATFSISILQQIDTSIRECQ 371
P + G D +I Q++ GKT SI QQ+DT RE Q
Sbjct: 1577 PSLMGTDEIICQSREHAGKTPPALSSIPQQLDTG-REIQ 1614
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 213 GVYASQQFFFEVHVIEGFDNLIPVGVKC 130
GVY F H + GF N IP +C
Sbjct: 742 GVYLESNVFQNGHALVGFQNTIPASQEC 769
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKT 314
I GRDV+A AQ+G+GKT
Sbjct: 169 IAGRDVMACAQTGSGKT 185
>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Frame = +1
Query: 73 NGPSKDQGSYDGPPGMDPGTLD-------TDWDQVVE 162
NGP+ D YD PP P T D T+WD ++
Sbjct: 340 NGPTSDNTDYDSPPRATP-TYDAPTRSTRTNWDPTID 375
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTS 356
++GRDV A G+GK + + I+ QI S
Sbjct: 222 LRGRDVAGVAIEGSGKRLAYLLPIIHQITES 252
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,379,793
Number of Sequences: 59808
Number of extensions: 358036
Number of successful extensions: 1732
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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