Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0344
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       47   1e-07
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRELAQQIQ 416
           + GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTREL  QI 
Sbjct: 231 MNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIW 290

Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
           + ++    +   K     GGT+V
Sbjct: 291 QQIVKFSLNSILKTVVAYGGTSV 313



 Score = 27.9 bits (59), Expect = 0.061
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 151 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 295 SQELEKLLLSLYRFYNKSIQAFVNV 369
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 477 CHQCKHGI*HSS 442
           CH+CK+GI  SS
Sbjct: 43  CHKCKYGIAMSS 54


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 245 NAQYALHPRTRCY 283
           N QYAL+P T  Y
Sbjct: 109 NIQYALNPNTEEY 121


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 180 PQRRIVERHIRLWF*KTFC 236
           P +++    I  WF  TFC
Sbjct: 521 PDKQLTLNEIYNWFQNTFC 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,018
Number of Sequences: 438
Number of extensions: 3456
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)