BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0344 (485 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 110 4e-25 At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 108 2e-24 At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 107 4e-24 At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 105 2e-23 At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 93 9e-20 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 70 7e-13 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 70 7e-13 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 65 2e-11 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 65 2e-11 At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 62 2e-10 At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 3e-10 At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 60 6e-10 At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 59 2e-09 At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 2e-09 At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 55 2e-08 At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 54 4e-08 At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 4e-08 At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 53 9e-08 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 53 1e-07 At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 51 4e-07 At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 51 4e-07 At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 6e-07 At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 49 1e-06 At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 49 1e-06 At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 49 1e-06 At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 47 6e-06 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 46 1e-05 At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 1e-05 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 4e-05 At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 44 7e-05 At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 44 7e-05 At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 7e-05 At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 7e-05 At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 1e-04 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 43 1e-04 At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 43 1e-04 At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 43 1e-04 At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 43 1e-04 At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 2e-04 At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04 At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 5e-04 At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 5e-04 At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 40 7e-04 At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 40 7e-04 At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 40 9e-04 At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 40 9e-04 At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 39 0.002 At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.002 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 39 0.002 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 39 0.002 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.004 At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.005 At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.006 At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.006 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 37 0.006 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 36 0.011 At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.014 At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.019 At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.033 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 35 0.033 At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 33 0.077 At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 32 0.24 At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro... 29 1.3 At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 2.2 At3g10020.1 68416.m01202 expressed protein 28 2.9 At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 28 2.9 At1g76010.1 68414.m08825 expressed protein 28 3.8 At1g14180.2 68414.m01677 expressed protein 27 5.1 At1g14180.1 68414.m01676 expressed protein 27 5.1 At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 6.7 At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 27 6.7 At4g30790.1 68417.m04362 expressed protein 27 8.9 At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 27 8.9 At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 8.9 >At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain Length = 412 Score = 110 bits (265), Expect = 4e-25 Identities = 51/77 (66%), Positives = 63/77 (81%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434 +P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A Sbjct: 71 VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRAL 130 Query: 435 GDHLNAKCHACIGGTNV 485 GD+L K HAC+GGT+V Sbjct: 131 GDYLGVKVHACVGGTSV 147 Score = 62.9 bits (146), Expect = 1e-10 Identities = 29/39 (74%), Positives = 32/39 (82%) Frame = +1 Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70 >At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative similar to Eukaryotic initiation factor 4A-10 GB:P41382 [Nicotiana tabacum]; identical to (putative) RNA helicase GB:CAA09211 [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999)) Length = 414 Score = 108 bits (259), Expect = 2e-24 Identities = 50/77 (64%), Positives = 62/77 (80%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434 +P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A Sbjct: 73 IPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRAL 132 Query: 435 GDHLNAKCHACIGGTNV 485 GD+L K AC+GGT+V Sbjct: 133 GDYLGVKAQACVGGTSV 149 Score = 62.9 bits (146), Expect = 1e-10 Identities = 28/42 (66%), Positives = 35/42 (83%) Frame = +1 Query: 130 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGI 72 >At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] Length = 412 Score = 107 bits (257), Expect = 4e-24 Identities = 49/77 (63%), Positives = 62/77 (80%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434 +P +G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ A Sbjct: 71 VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRAL 130 Query: 435 GDHLNAKCHACIGGTNV 485 GD+ K HAC+GGT+V Sbjct: 131 GDYQGVKVHACVGGTSV 147 Score = 63.7 bits (148), Expect = 6e-11 Identities = 29/39 (74%), Positives = 33/39 (84%) Frame = +1 Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70 >At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984 Length = 408 Score = 105 bits (251), Expect = 2e-23 Identities = 49/77 (63%), Positives = 60/77 (77%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434 MP +QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A Sbjct: 67 MPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAI 126 Query: 435 GDHLNAKCHACIGGTNV 485 G H N + HACIGG +V Sbjct: 127 GLHANIQAHACIGGNSV 143 Score = 58.8 bits (136), Expect = 2e-09 Identities = 24/39 (61%), Positives = 33/39 (84%) Frame = +1 Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+ Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAV 66 >At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 392 Score = 93.1 bits (221), Expect = 9e-20 Identities = 41/77 (53%), Positives = 58/77 (75%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434 +P ++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A Sbjct: 54 VPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAI 113 Query: 435 GDHLNAKCHACIGGTNV 485 G H N + HACIGG ++ Sbjct: 114 GAHTNIQAHACIGGKSI 130 Score = 50.0 bits (114), Expect = 8e-07 Identities = 18/33 (54%), Positives = 29/33 (87%) Frame = +1 Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 +++FDDM + +++LRG+Y YG++KPS IQQRA+ Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRAL 53 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 70.1 bits (164), Expect = 7e-13 Identities = 33/74 (44%), Positives = 48/74 (64%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V G H Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225 Query: 444 LNAKCHACIGGTNV 485 L + GGT++ Sbjct: 226 LKIQVMVTTGGTSL 239 Score = 41.5 bits (93), Expect = 3e-04 Identities = 19/33 (57%), Positives = 24/33 (72%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 F+D LK ELL GIY GFE+PS IQ+ +I +A Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 70.1 bits (164), Expect = 7e-13 Identities = 33/74 (44%), Positives = 48/74 (64%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V G H Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225 Query: 444 LNAKCHACIGGTNV 485 L + GGT++ Sbjct: 226 LKIQVMVTTGGTSL 239 Score = 41.5 bits (93), Expect = 3e-04 Identities = 19/33 (57%), Positives = 24/33 (72%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 F+D LK ELL GIY GFE+PS IQ+ +I +A Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 65.3 bits (152), Expect = 2e-11 Identities = 31/74 (41%), Positives = 47/74 (63%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V + Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218 Query: 444 LNAKCHACIGGTNV 485 LN + GGT++ Sbjct: 219 LNIQVMVTTGGTSL 232 Score = 42.7 bits (96), Expect = 1e-04 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 F+D LK +LL+GIY GFEKPS IQ+ +I +A Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 65.3 bits (152), Expect = 2e-11 Identities = 31/74 (41%), Positives = 47/74 (63%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V + Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218 Query: 444 LNAKCHACIGGTNV 485 LN + GGT++ Sbjct: 219 LNIQVMVTTGGTSL 232 Score = 42.7 bits (96), Expect = 1e-04 Identities = 19/33 (57%), Positives = 25/33 (75%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 F+D LK +LL+GIY GFEKPS IQ+ +I +A Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158 >At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family Length = 491 Score = 62.1 bits (144), Expect = 2e-10 Identities = 30/74 (40%), Positives = 46/74 (62%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + A G Sbjct: 93 LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152 Query: 444 LNAKCHACIGGTNV 485 LN +C +GG ++ Sbjct: 153 LNLRCSVIVGGMDM 166 >At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative Length = 427 Score = 61.7 bits (143), Expect = 3e-10 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + + Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140 Query: 444 L-NAKCHACIGGTNV 485 L + K GG N+ Sbjct: 141 LPDTKVSVFYGGVNI 155 Score = 32.3 bits (70), Expect = 0.18 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 F D LK ELLR I GFE PS +Q I Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77 >At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 427 Score = 61.7 bits (143), Expect = 3e-10 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + + Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140 Query: 444 L-NAKCHACIGGTNV 485 L + K GG N+ Sbjct: 141 LPDTKVSVFYGGVNI 155 Score = 32.3 bits (70), Expect = 0.18 Identities = 16/30 (53%), Positives = 17/30 (56%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255 F D LK ELLR I GFE PS +Q I Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 60.5 bits (140), Expect = 6e-10 Identities = 30/74 (40%), Positives = 44/74 (59%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443 + G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V + Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248 Query: 444 LNAKCHACIGGTNV 485 L + GGT++ Sbjct: 249 LKIEVMVTTGGTSL 262 Score = 44.0 bits (99), Expect = 5e-05 Identities = 20/33 (60%), Positives = 25/33 (75%) Frame = +1 Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 F+D LK +LLRGIY GFEKPS IQ+ +I +A Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIA 188 >At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 344 Score = 58.8 bits (136), Expect = 2e-09 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +3 Query: 276 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHL-NA 452 DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L + Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61 Query: 453 KCHACIGGTNV 485 K GG N+ Sbjct: 62 KVSVFYGGVNI 72 >At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 747 Score = 58.4 bits (135), Expect = 2e-09 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 10/78 (12%) Frame = +3 Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELA 404 +P +QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193 Query: 405 QQIQKVVIAXGDHLNAKC 458 +Q++K + +L+ C Sbjct: 194 KQVEKEIKESAPYLSTVC 211 >At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar to RNA helicase GI:3776027 from [Arabidopsis thaliana] Length = 513 Score = 55.2 bits (127), Expect = 2e-08 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%) Frame = +3 Query: 249 RNMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQK 419 + MP I G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K Sbjct: 57 KTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLK 116 Query: 420 VVIAXGDHLNAKCHACIGGTNV 485 G + + +GG ++ Sbjct: 117 FTKELGKFTDLRVSLLVGGDSM 138 >At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR:I49731 Length = 496 Score = 54.4 bits (125), Expect = 4e-08 Identities = 25/55 (45%), Positives = 38/55 (69%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXG 437 + +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ G Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186 Score = 33.9 bits (74), Expect = 0.058 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%) Frame = +1 Query: 166 FDDMNLKEELLRGIYA-YGFEKPSAIQ 243 F+D+NL EL++G+Y FEKPS IQ Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119 >At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 610 Score = 54.4 bits (125), Expect = 4e-08 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%) Frame = +3 Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419 P ++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K Sbjct: 149 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208 Query: 420 VVIAXGDHLNAKCHACIGGTNV 485 L+ C GGT + Sbjct: 209 EFRESAPSLDTIC--LYGGTPI 228 >At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 Length = 789 Score = 53.2 bits (122), Expect = 9e-08 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAX 434 + GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++ Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261 Query: 435 GDHLNAKCHACIGGTNV 485 + KC +GG +V Sbjct: 262 AQFTDIKCGLIVGGLSV 278 Score = 32.3 bits (70), Expect = 0.18 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264 +TF ++NL LLR G++KP+ IQ I LA Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLA 201 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 52.8 bits (121), Expect = 1e-07 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Frame = +3 Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419 P ++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K Sbjct: 137 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196 Query: 420 VVIAXGDHLNAKCHACIGGTNV 485 L+ C GGT + Sbjct: 197 EFRESAPSLDTIC--LYGGTPI 216 >At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL:AF009179 Length = 456 Score = 51.2 bits (117), Expect = 4e-07 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 12/83 (14%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 407 ++G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103 Query: 408 QIQKVVIAXGDHLNAKCHACIGG 476 QI + A G ++ +C +GG Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126 Score = 33.9 bits (74), Expect = 0.058 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%) Frame = +1 Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAM 279 ++VV+TF ++ ++EEL++ G++ PS IQ A+ L KD + Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50 >At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 733 Score = 51.2 bits (117), Expect = 4e-07 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 8/82 (9%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 419 +Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++ Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407 Query: 420 VVIAXGDHLNAKCHACIGGTNV 485 + +L + + +GG ++ Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSI 429 Score = 29.9 bits (64), Expect = 0.95 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = +1 Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICL 261 + ++++ L ELL+ + G++KPS IQ AI L Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346 >At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo sapiens, SWISSPROT:IF42_HUMAN Length = 472 Score = 50.4 bits (115), Expect = 6e-07 Identities = 24/51 (47%), Positives = 32/51 (62%) Frame = +3 Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 422 GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163 >At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 49.2 bits (112), Expect = 1e-06 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431 +QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252 Query: 432 XGDHLNAKCHACIGG 476 G C GG Sbjct: 253 FGRSSRISCTCLYGG 267 >At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 49.2 bits (112), Expect = 1e-06 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431 +QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252 Query: 432 XGDHLNAKCHACIGG 476 G C GG Sbjct: 253 FGRSSRISCTCLYGG 267 >At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 618 Score = 49.2 bits (112), Expect = 1e-06 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431 +QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ + Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252 Query: 432 XGDHLNAKCHACIGG 476 G C GG Sbjct: 253 FGRSSRISCTCLYGG 267 >At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 1166 Score = 47.2 bits (107), Expect = 6e-06 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Frame = +3 Query: 246 TRNMPCIQ-GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQ 407 T+ +P I GRD I A++G+GKT F + +L+ I D E L++APTREL Q Sbjct: 557 TQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQ 616 Query: 408 QIQKVVIAXGDHLNAKCHACIGGTNV 485 QI + L +C GG+ V Sbjct: 617 QIHSDIRKFSKPLGIRCVPVYGGSGV 642 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 46.4 bits (105), Expect = 1e-05 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431 +Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ + Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529 Query: 432 XGDHLNAKCHACIGG 476 G C GG Sbjct: 530 FGRSSRISCTCLYGG 544 >At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 713 Score = 46.0 bits (104), Expect = 1e-05 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431 +Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ + Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323 Query: 432 XGDHLNAKCHACIGG 476 G C GG Sbjct: 324 FGKSSKISCACLYGG 338 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 44.4 bits (100), Expect = 4e-05 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 413 ++GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI Sbjct: 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253 Query: 414 QKVVIAXGDHLNAKCHACIGGTNV 485 K GGT + Sbjct: 254 HDEAKKFSYQTGVKVVVAYGGTPI 277 >At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 591 Score = 43.6 bits (98), Expect = 7e-05 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419 ++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+ Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256 >At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 484 Score = 43.6 bits (98), Expect = 7e-05 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419 ++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+ Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256 >At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 505 Score = 43.6 bits (98), Expect = 7e-05 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419 + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++ Sbjct: 145 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 204 Query: 420 VVIAXGDHLNAKCHACIGG 476 G L K +GG Sbjct: 205 QAKMLGKGLPFKTALVVGG 223 >At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 368 Score = 43.6 bits (98), Expect = 7e-05 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419 + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++ Sbjct: 8 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 67 Query: 420 VVIAXGDHLNAKCHACIGG 476 G L K +GG Sbjct: 68 QAKMLGKGLPFKTALVVGG 86 >At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar to D-E-A-D box protein [Drosophila melanogaster] GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 512 Score = 43.2 bits (97), Expect = 1e-04 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAXGDHLN 449 RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A + Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122 Query: 450 AKCHACIGGTNV 485 + +G +++ Sbjct: 123 LSVGSAVGQSSI 134 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 43.2 bits (97), Expect = 1e-04 Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 12/94 (12%) Frame = +3 Query: 240 PATRN-MPCIQ-GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 383 P RN +P + GRD++A AQ+G+GKTA F I+ I D I + A+IL Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230 Query: 384 APTRELAQQIQKVVIAXGDHLNAKCHACIGGTNV 485 +PTRELA QI K GGT V Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264 >At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to RNA helicase GB:A57514 GI:897915 from [Rattus norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 989 Score = 43.2 bits (97), Expect = 1e-04 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 5/79 (6%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 428 + GRD I A++G+GKT F + +L+ I D E L++APTREL QQI + Sbjct: 431 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIR 490 Query: 429 AXGDHLNAKCHACIGGTNV 485 L C GG+ V Sbjct: 491 KFSKALGIICVPVYGGSGV 509 >At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 568 Score = 42.7 bits (96), Expect = 1e-04 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%) Frame = +3 Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVV 425 P ++G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V Sbjct: 122 PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVA 181 Query: 426 IAXGDHLNAKCHACIGGTN 482 H + IGG N Sbjct: 182 EELLKHHSQTVSMVIGGNN 200 >At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI:5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 501 Score = 42.7 bits (96), Expect = 1e-04 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 428 ++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+ Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193 Query: 429 AXGDHLNAKCHACIGG 476 G K GG Sbjct: 194 KFGSSSKIKTTCIYGG 209 >At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16) identical to cDNA DEAD box RNA helicase, RH16 GI:3776006 Length = 626 Score = 41.9 bits (94), Expect = 2e-04 Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 6/56 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 413 ++G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+ Sbjct: 81 LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136 Score = 33.9 bits (74), Expect = 0.058 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = +1 Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291 ++ ++F+++ L L+R + G EKP+ IQQ AI L KD + K Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91 >At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar to p68 RNA helicase [Schizosaccharomyces pombe] GI:173419 Length = 537 Score = 41.5 bits (93), Expect = 3e-04 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 416 + GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208 Query: 417 KVVIAXGDHLNAKCHACIGGTN 482 V+ G+ K GG++ Sbjct: 209 DVLREAGEPCGLKSICVYGGSS 230 >At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative Length = 739 Score = 40.7 bits (91), Expect = 5e-04 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Frame = +3 Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIAXG 437 GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ G Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167 Query: 438 DHLNAKCHACIGG 476 IGG Sbjct: 168 KFHKFSAGLLIGG 180 >At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 798 Score = 40.7 bits (91), Expect = 5e-04 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 12/85 (14%) Frame = +3 Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413 C+ G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI Sbjct: 362 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421 Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479 K ++ D + + IGGT Sbjct: 422 AAEGKALLKFHDGIGVQ--TLIGGT 444 >At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 563 Score = 40.3 bits (90), Expect = 7e-04 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQ 416 +QG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q Sbjct: 115 LQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174 Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485 + I H + IGGT + Sbjct: 175 EANILLKYHPSIGVQVVIGGTKL 197 >At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB:CAA09204 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH13 GI:3776002 Length = 832 Score = 40.3 bits (90), Expect = 7e-04 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%) Frame = +3 Query: 252 NMPCIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 371 N+ QG+DVI A++G+GKT F + ILQ+ +D + E Q Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281 Query: 372 ALILAPTRELAQQIQKVVIAXGDHLNAKCHACIGG 476 ALI+ PTRELA Q+ + + +L+ K +GG Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316 >At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong similarity to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH31 GI:3776030 Length = 522 Score = 39.9 bits (89), Expect = 9e-04 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410 ++G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q Sbjct: 89 LKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145 >At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI:3776024 Length = 850 Score = 39.9 bits (89), Expect = 9e-04 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410 +QG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q Sbjct: 417 LQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473 >At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 760 Score = 39.1 bits (87), Expect = 0.002 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 413 + GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317 Score = 31.9 bits (69), Expect = 0.24 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 142 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--ICLASKDAM 279 D + V+TF+D +++ I +EKP+AIQ +A I L+ +D + Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269 >At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 845 Score = 39.1 bits (87), Expect = 0.002 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%) Frame = +3 Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413 C+ G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI Sbjct: 409 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468 Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479 K ++ D + + IGGT Sbjct: 469 AAEGKALLKNHDGIGVQ--TLIGGT 491 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 38.7 bits (86), Expect = 0.002 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422 RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248 Query: 423 VIAXGDHLNAKCHACIGGTNV 485 K GGT + Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 38.7 bits (86), Expect = 0.002 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422 RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248 Query: 423 VIAXGDHLNAKCHACIGGTNV 485 K GGT + Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 37.9 bits (84), Expect = 0.004 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 413 + G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+ Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190 Query: 414 QKVVIAXGDHLNAKCHACIGG 476 A G L GG Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211 >At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334 Length = 633 Score = 37.5 bits (83), Expect = 0.005 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = +3 Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 410 P + G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q Sbjct: 187 PLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241 >At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae) Length = 558 Score = 37.1 bits (82), Expect = 0.006 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAX 434 +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113 Query: 435 GDHL-NAKCHACIGGTNV 485 L N +GG V Sbjct: 114 VSTLPNVNSVLLVGGREV 131 >At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 465 Score = 37.1 bits (82), Expect = 0.006 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%) Frame = +3 Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIA 431 +DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARA 113 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 37.1 bits (82), Expect = 0.006 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELA 404 I+G D + Q+ +G+GKT + + IL +I + E QA+I+AP+REL Sbjct: 145 IKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELG 204 Query: 405 QQI-QKVVIAXGDHLNAKCHACIGGTN 482 QI ++V G +GG N Sbjct: 205 MQIVREVEKLLGPVHRRMVQQLVGGAN 231 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 36.3 bits (80), Expect = 0.011 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 416 ++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q+ Sbjct: 147 MERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY 206 Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485 +V + H + GG+ + Sbjct: 207 RVAKSISHHARFRSILVSGGSRI 229 >At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) Length = 593 Score = 35.9 bits (79), Expect = 0.014 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%) Frame = +3 Query: 231 FCNPA-TRNMPCIQG-RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 386 FC P +P + +DV A +G+GKT F + +++ + S + +I++ Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97 Query: 387 PTRELAQQIQKVVIAXGDHL-NAKCHACIGGTNV 485 PTREL+ QI V L N +GG V Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131 >At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17) identical to GB:CAA09207, contains a DEAD/DEAH box family ATP-dependent helicas signature; identical to cDNA DEAD box RNA helicase, RH17 GI:3776008 Length = 609 Score = 35.5 bits (78), Expect = 0.019 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 425 + GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + + Sbjct: 65 LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124 >At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to RNA helicase involved in rRNA processing GB:6321267 from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH box domain Length = 541 Score = 34.7 bits (76), Expect = 0.033 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 410 + GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q Sbjct: 176 LSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 34.7 bits (76), Expect = 0.033 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%) Frame = +3 Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQ 410 P I G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q Sbjct: 407 PVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466 Query: 411 I 413 + Sbjct: 467 V 467 >At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272 Length = 542 Score = 33.5 bits (73), Expect = 0.077 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQIQK 419 + GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191 Query: 420 VV 425 VV Sbjct: 192 VV 193 >At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative Length = 591 Score = 31.9 bits (69), Expect = 0.24 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 419 + GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q + Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240 Query: 420 VV 425 VV Sbjct: 241 VV 242 >At1g54570.1 68414.m06223 esterase/lipase/thioesterase family protein contains Interpro entry IPR000379 Length = 704 Score = 29.5 bits (63), Expect = 1.3 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Frame = +1 Query: 184 KEELLRGIYAYGFEKPSAIQQRAICLAS-KDAMLSLKPSQELEKLLLSLYRFYNKSIQAF 360 K +LLR AY + A+Q + LAS KD ML PSQE K L L + N S++ F Sbjct: 307 KLKLLRSGCAYANSRIHAVQAEVLVLASGKDMML---PSQEEAKRLHGLLK--NCSVRCF 361 >At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22) similar to RNA helicase GI:3776015 from [Arabidopsis thaliana]; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00270: DEAD/DEAH box helicase; matches EST OAO811-2 Length = 581 Score = 28.7 bits (61), Expect = 2.2 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +3 Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI 347 + G+DVI A++G+GKT + I+ Q+ Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQL 142 >At3g10020.1 68416.m01202 expressed protein Length = 149 Score = 28.3 bits (60), Expect = 2.9 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = +1 Query: 76 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAI 240 GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGV 137 >At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain Length = 691 Score = 28.3 bits (60), Expect = 2.9 Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 2/53 (3%) Frame = +3 Query: 324 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIAXGDHLNAKCHACIGG 476 +++ L+++ +++EC +A+ + P+ A Q++ + + G+ NA+ H C G Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315 >At1g76010.1 68414.m08825 expressed protein Length = 350 Score = 27.9 bits (59), Expect = 3.8 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = +1 Query: 31 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 129 S R D P + +GPS+ +G YDGP G G Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317 Score = 26.6 bits (56), Expect = 8.9 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%) Frame = +1 Query: 40 RRSEDWPEDSK---NGPSKDQGSYDGP 111 RR D P + +GPS+ +G YDGP Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291 >At1g14180.2 68414.m01677 expressed protein Length = 242 Score = 27.5 bits (58), Expect = 5.1 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = -2 Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41 +++ S+ G C+R Q P SR V P + +M+ WN L N L Sbjct: 124 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 181 Query: 40 FQTNKTCFNLVPN 2 F C PN Sbjct: 182 FNAMTHCVQYAPN 194 >At1g14180.1 68414.m01676 expressed protein Length = 245 Score = 27.5 bits (58), Expect = 5.1 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Frame = -2 Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41 +++ S+ G C+R Q P SR V P + +M+ WN L N L Sbjct: 127 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 184 Query: 40 FQTNKTCFNLVPN 2 F C PN Sbjct: 185 FNAMTHCVQYAPN 197 >At5g16680.1 68418.m01951 PHD finger family protein contains Pfam domain, PF00628: PHD-finger Length = 1290 Score = 27.1 bits (57), Expect = 6.7 Identities = 24/95 (25%), Positives = 34/95 (35%) Frame = +1 Query: 34 SERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 213 S+R+ +K PS +G G D+D +D+N L + A Sbjct: 632 SKRQRSSLLAGAKGLPSSQKGGQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAVDA 691 Query: 214 YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLL 318 +KPS + R L DA L EK L Sbjct: 692 ALRKKPSFGKNRV--LEQSDASLVANVDSSSEKTL 724 >At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger) and Pfam profile: PF00023 ankyrin repeat Length = 376 Score = 27.1 bits (57), Expect = 6.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 375 LILAPTRELAQQIQKVVIAXGDHLNAKCHACIGGT 479 LILA T + + K ++ G ++NA C GGT Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80 >At4g30790.1 68417.m04362 expressed protein Length = 1148 Score = 26.6 bits (56), Expect = 8.9 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = -2 Query: 154 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 14 L P + GP EVH +N+L P M +N ++ LL F + K N Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383 >At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar) Length = 1230 Score = 26.6 bits (56), Expect = 8.9 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = +1 Query: 13 G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 114 G N S+++ + WP + +G GSY P Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204 >At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger) Length = 199 Score = 26.6 bits (56), Expect = 8.9 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = -3 Query: 483 HWCHQCKHGI 454 HWCH C+ GI Sbjct: 10 HWCHTCRRGI 19 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,440,007 Number of Sequences: 28952 Number of extensions: 244870 Number of successful extensions: 891 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 799 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 848 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 838967680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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