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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0344
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13920.1 68416.m01758 eukaryotic translation initiation facto...   110   4e-25
At1g72730.1 68414.m08410 eukaryotic translation initiation facto...   108   2e-24
At1g54270.1 68414.m06187 eukaryotic translation initiation facto...   107   4e-24
At3g19760.1 68416.m02501 eukaryotic translation initiation facto...   105   2e-23
At1g51380.1 68414.m05780 eukaryotic translation initiation facto...    93   9e-20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    70   7e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    70   7e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)...    65   2e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)...    65   2e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    62   2e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative              62   3e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)...    62   3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative              60   6e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)...    59   2e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden...    58   2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila...    55   2e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    54   4e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s...    54   4e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)...    53   9e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar...    53   1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)...    51   4e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar...    51   4e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY...    50   6e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ...    49   1e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ...    49   1e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ...    49   1e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar...    47   6e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    46   1e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar...    46   1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar...    44   4e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica...    44   7e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica...    44   7e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c...    44   7e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c...    44   7e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila...    43   1e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    43   1e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    43   1e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co...    43   1e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ...    43   1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    42   2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila...    42   3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative              41   5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    41   5e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ...    40   7e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)...    40   7e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ...    40   9e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    40   9e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila...    39   0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    39   0.002
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ...    39   0.002
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ...    39   0.002
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    38   0.004
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    38   0.005
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila...    37   0.006
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai...    37   0.006
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    37   0.006
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he...    36   0.011
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)       36   0.014
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)...    36   0.019
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila...    35   0.033
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai...    35   0.033
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA...    33   0.077
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative           32   0.24 
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro...    29   1.3  
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)...    29   2.2  
At3g10020.1 68416.m01202 expressed protein                             28   2.9  
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi...    28   2.9  
At1g76010.1 68414.m08825 expressed protein                             28   3.8  
At1g14180.2 68414.m01677 expressed protein                             27   5.1  
At1g14180.1 68414.m01676 expressed protein                             27   5.1  
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam...    27   6.7  
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At4g30790.1 68417.m04362 expressed protein                             27   8.9  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   8.9  
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa...    27   8.9  

>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
           4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
           contains Pfam profile PF00270: DEAD/DEAH box helicase;
           contains Pfam profile PF00271: Helicase conserved
           C-terminal domain
          Length = 412

 Score =  110 bits (265), Expect = 4e-25
 Identities = 51/77 (66%), Positives = 63/77 (81%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
           +P  +G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A 
Sbjct: 71  VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRAL 130

Query: 435 GDHLNAKCHACIGGTNV 485
           GD+L  K HAC+GGT+V
Sbjct: 131 GDYLGVKVHACVGGTSV 147



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +1

Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I
Sbjct: 32  TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70


>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative similar to Eukaryotic
           initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
           identical to (putative) RNA helicase GB:CAA09211
           [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
           628-636 (1999))
          Length = 414

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/77 (64%), Positives = 62/77 (80%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
           +P  +G DVI QAQSGTGKTATF   +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A 
Sbjct: 73  IPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRAL 132

Query: 435 GDHLNAKCHACIGGTNV 485
           GD+L  K  AC+GGT+V
Sbjct: 133 GDYLGVKAQACVGGTSV 149



 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = +1

Query: 130 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           T  T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I
Sbjct: 31  TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGI 72


>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
           4A-2 / eIF-4A-2 similar to eukaryotic translation
           initiation factor 4A GI:19696 from [Nicotiana
           plumbaginifolia]
          Length = 412

 Score =  107 bits (257), Expect = 4e-24
 Identities = 49/77 (63%), Positives = 62/77 (80%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
           +P  +G DVI QAQSGTGKTATF   +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ A 
Sbjct: 71  VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRAL 130

Query: 435 GDHLNAKCHACIGGTNV 485
           GD+   K HAC+GGT+V
Sbjct: 131 GDYQGVKVHACVGGTSV 147



 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 29/39 (74%), Positives = 33/39 (84%)
 Frame = +1

Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I
Sbjct: 32  TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70


>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative / DEAD box RNA helicase,
           putative contains DEAD/DEAH helicase domain; similar to
           RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
           identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
          Length = 408

 Score =  105 bits (251), Expect = 2e-23
 Identities = 49/77 (63%), Positives = 60/77 (77%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
           MP +QGRDVIAQAQSGTGKT+  ++S+ Q +DTS RE QALIL+PTRELA Q +K + A 
Sbjct: 67  MPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAI 126

Query: 435 GDHLNAKCHACIGGTNV 485
           G H N + HACIGG +V
Sbjct: 127 GLHANIQAHACIGGNSV 143



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 33/39 (84%)
 Frame = +1

Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           TD  + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+
Sbjct: 28  TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAV 66


>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
           4A, putative / eIF-4A, putative
          Length = 392

 Score = 93.1 bits (221), Expect = 9e-20
 Identities = 41/77 (53%), Positives = 58/77 (75%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
           +P ++GRDVIAQAQSGTGKT+  +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A 
Sbjct: 54  VPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAI 113

Query: 435 GDHLNAKCHACIGGTNV 485
           G H N + HACIGG ++
Sbjct: 114 GAHTNIQAHACIGGKSI 130



 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 18/33 (54%), Positives = 29/33 (87%)
 Frame = +1

Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           +++FDDM + +++LRG+Y YG++KPS IQQRA+
Sbjct: 21  IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRAL 53


>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q  +V    G H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225

Query: 444 LNAKCHACIGGTNV 485
           L  +     GGT++
Sbjct: 226 LKIQVMVTTGGTSL 239



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           F+D  LK ELL GIY  GFE+PS IQ+ +I +A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 33/74 (44%), Positives = 48/74 (64%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + GRD++A+A++GTGKTA F I +L++ID      QA+I+ PTRELA Q  +V    G H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225

Query: 444 LNAKCHACIGGTNV 485
           L  +     GGT++
Sbjct: 226 LKIQVMVTTGGTSL 239



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           F+D  LK ELL GIY  GFE+PS IQ+ +I +A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165


>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/74 (41%), Positives = 47/74 (63%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q  +V      +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218

Query: 444 LNAKCHACIGGTNV 485
           LN +     GGT++
Sbjct: 219 LNIQVMVTTGGTSL 232



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           F+D  LK +LL+GIY  GFEKPS IQ+ +I +A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158


>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
           identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
          Length = 498

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 31/74 (41%), Positives = 47/74 (63%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + G D++A+A++GTGKT  F I +L++ID +    QA+IL PTRELA Q  +V      +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218

Query: 444 LNAKCHACIGGTNV 485
           LN +     GGT++
Sbjct: 219 LNIQVMVTTGGTSL 232



 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           F+D  LK +LL+GIY  GFEKPS IQ+ +I +A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 30/74 (40%), Positives = 46/74 (62%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + GRDV+  AQ+G+GKTA F++ IL ++        AL++ PTRELA Q+ +   A G  
Sbjct: 93  LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152

Query: 444 LNAKCHACIGGTNV 485
           LN +C   +GG ++
Sbjct: 153 LNLRCSVIVGGMDM 166


>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
          Length = 427

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           I G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +
Sbjct: 81  ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140

Query: 444 L-NAKCHACIGGTNV 485
           L + K     GG N+
Sbjct: 141 LPDTKVSVFYGGVNI 155



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           F D  LK ELLR I   GFE PS +Q   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77


>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 427

 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           I G DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +
Sbjct: 81  ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140

Query: 444 L-NAKCHACIGGTNV 485
           L + K     GG N+
Sbjct: 141 LPDTKVSVFYGGVNI 155



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
           F D  LK ELLR I   GFE PS +Q   I
Sbjct: 48  FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77


>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
          Length = 528

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 30/74 (40%), Positives = 44/74 (59%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
           + G D++A+A++GTGKT  F I  L++ID      QA+IL PTRELA Q  +V      +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248

Query: 444 LNAKCHACIGGTNV 485
           L  +     GGT++
Sbjct: 249 LKIEVMVTTGGTSL 262



 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           F+D  LK +LLRGIY  GFEKPS IQ+ +I +A
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIA 188


>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
           DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
           EMBL:ATH010466
          Length = 344

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +3

Query: 276 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHL-NA 452
           DVI QA+SG GKTA F +S LQQI+ S  +  AL+L  TRELA QI    +    +L + 
Sbjct: 2   DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61

Query: 453 KCHACIGGTNV 485
           K     GG N+
Sbjct: 62  KVSVFYGGVNI 72


>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00098: Zinc knuckle
          Length = 747

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 10/78 (12%)
 Frame = +3

Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELA 404
           +P +QGRD+IA+A++GTGKT  F I I++++       T+ R      + L+LAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193

Query: 405 QQIQKVVIAXGDHLNAKC 458
           +Q++K +     +L+  C
Sbjct: 194 KQVEKEIKESAPYLSTVC 211


>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
           to RNA helicase GI:3776027 from [Arabidopsis thaliana]
          Length = 513

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
 Frame = +3

Query: 249 RNMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQK 419
           + MP I  G DV+A A++G+GKTA F I +L+++   + +   +ALIL+PTR+LA+Q  K
Sbjct: 57  KTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLK 116

Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
                G   + +    +GG ++
Sbjct: 117 FTKELGKFTDLRVSLLVGGDSM 138


>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 25/55 (45%), Positives = 38/55 (69%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXG 437
           + +IAQA +G+GKT  F + +L ++D ++RE QAL + PTRELA Q  +V+   G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186



 Score = 33.9 bits (74), Expect = 0.058
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 166 FDDMNLKEELLRGIYA-YGFEKPSAIQ 243
           F+D+NL  EL++G+Y    FEKPS IQ
Sbjct: 93  FEDLNLSPELMKGLYVEMKFEKPSKIQ 119


>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
           similar to RNA helicases GI:3775995, GI:3775987
           [Arabidopsis thaliana]; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 610

 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
 Frame = +3

Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419
           P ++GRD+I +A++GTGKT  F I I+ +I          +  Q L+LAPTRELA+Q++K
Sbjct: 149 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208

Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
                   L+  C    GGT +
Sbjct: 209 EFRESAPSLDTIC--LYGGTPI 228


>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
           identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
          Length = 789

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAX 434
           + GRD+ A A +G+GKTA F++  L+++      +   + LIL PTRELA QI  ++   
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261

Query: 435 GDHLNAKCHACIGGTNV 485
               + KC   +GG +V
Sbjct: 262 AQFTDIKCGLIVGGLSV 278



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
           +TF ++NL   LLR     G++KP+ IQ   I LA
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLA 201


>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
           RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 616

 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
 Frame = +3

Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419
           P ++GRD+I +A++GTGKT  F I I+ +I          R    L+LAPTRELA+Q++K
Sbjct: 137 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196

Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
                   L+  C    GGT +
Sbjct: 197 EFRESAPSLDTIC--LYGGTPI 216


>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
           probable replication protein A1, Oryza sativa,
           EMBL:AF009179
          Length = 456

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 407
           ++G+DVI  AQ+G+GKT  F+I ILQ +   + + +            A +L+PTRELA 
Sbjct: 44  LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103

Query: 408 QIQKVVIAXGDHLNAKCHACIGG 476
           QI +   A G  ++ +C   +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126



 Score = 33.9 bits (74), Expect = 0.058
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = +1

Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAM 279
           ++VV+TF ++ ++EEL++     G++ PS IQ  A+   L  KD +
Sbjct: 5   NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50


>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
           SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 733

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 419
           +Q RDVI  A++G+GKTA F + +L  I      +   E +   A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407

Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
             +    +L  +  + +GG ++
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSI 429



 Score = 29.9 bits (64), Expect = 0.95
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICL 261
           + ++++  L  ELL+ +   G++KPS IQ  AI L
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346


>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
           EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
           sapiens, SWISSPROT:IF42_HUMAN
          Length = 472

 Score = 50.4 bits (115), Expect = 6e-07
 Identities = 24/51 (47%), Positives = 32/51 (62%)
 Frame = +3

Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 422
           GRD I  AQ+G+GKT T+ + I   I+      QA+I+ PTREL  Q+ KV
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163


>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 432 XGDHLNAKCHACIGG 476
            G      C    GG
Sbjct: 253 FGRSSRISCTCLYGG 267


>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 619

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 432 XGDHLNAKCHACIGG 476
            G      C    GG
Sbjct: 253 FGRSSRISCTCLYGG 267


>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
           RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
           thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 618

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
           +QGRD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ+  + 
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252

Query: 432 XGDHLNAKCHACIGG 476
            G      C    GG
Sbjct: 253 FGRSSRISCTCLYGG 267


>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
           RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 1166

 Score = 47.2 bits (107), Expect = 6e-06
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
 Frame = +3

Query: 246 TRNMPCIQ-GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQ 407
           T+ +P I  GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL Q
Sbjct: 557 TQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQ 616

Query: 408 QIQKVVIAXGDHLNAKCHACIGGTNV 485
           QI   +      L  +C    GG+ V
Sbjct: 617 QIHSDIRKFSKPLGIRCVPVYGGSGV 642


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
           +Q RD++A A++G+GKT  + I    +L+      R     LILAPTRELA QIQ   + 
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529

Query: 432 XGDHLNAKCHACIGG 476
            G      C    GG
Sbjct: 530 FGRSSRISCTCLYGG 544


>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 713

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
           +Q RD++A A++G+GKT  + I     LQ+I    R     L+L+PTRELA QIQ   + 
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323

Query: 432 XGDHLNAKCHACIGG 476
            G      C    GG
Sbjct: 324 FGKSSKISCACLYGG 338


>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 633

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 413
           ++GRD++A AQ+G+GKTA F   I+  I  D  ++  +        A+IL+PTRELA QI
Sbjct: 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253

Query: 414 QKVVIAXGDHLNAKCHACIGGTNV 485
                        K     GGT +
Sbjct: 254 HDEAKKFSYQTGVKVVVAYGGTPI 277


>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 591

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419
           ++GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256


>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
           putative (RH30) strong similarity to ethylene-responsive
           RNA helicase [Lycopersicon esculentum] GI:5669638;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 484

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419
           ++GRD+I  A++G+GKT  + +  L  +    R  Q      LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256


>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 505

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419
           + G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q++ 
Sbjct: 145 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 204

Query: 420 VVIAXGDHLNAKCHACIGG 476
                G  L  K    +GG
Sbjct: 205 QAKMLGKGLPFKTALVVGG 223


>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
           contains Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 368

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419
           + G+ ++A A +G+GKTA+F + I+ +  T          R   A++LAPTREL  Q++ 
Sbjct: 8   LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 67

Query: 420 VVIAXGDHLNAKCHACIGG 476
                G  L  K    +GG
Sbjct: 68  QAKMLGKGLPFKTALVVGG 86


>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
           to D-E-A-D box protein [Drosophila melanogaster]
           GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
           helicase, PF00271: Helicase conserved C-terminal domain
          Length = 512

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAXGDHLN 449
           RD+   + +G+GKT ++++ I+Q +    +R  +AL++ PTR+LA Q++ V  A    + 
Sbjct: 63  RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122

Query: 450 AKCHACIGGTNV 485
               + +G +++
Sbjct: 123 LSVGSAVGQSSI 134


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
 Frame = +3

Query: 240 PATRN-MPCIQ-GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 383
           P  RN +P +  GRD++A AQ+G+GKTA F   I+  I  D  I   +        A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230

Query: 384 APTRELAQQIQKVVIAXGDHLNAKCHACIGGTNV 485
           +PTRELA QI             K     GGT V
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264


>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 428
           + GRD I  A++G+GKT  F + +L+ I D    E       L++APTREL QQI   + 
Sbjct: 431 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIR 490

Query: 429 AXGDHLNAKCHACIGGTNV 485
                L   C    GG+ V
Sbjct: 491 KFSKALGIICVPVYGGSGV 509


>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
           non-consensus acceptor splice site AT at exon 2; similar
           to DEAD box helicase protein GB:NP_006764 from [Homo
           sapiens], contains Pfam profile: PF00270  DEAD/DEAH box
           helicase
          Length = 568

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
 Frame = +3

Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVV 425
           P ++G+DV+  A++G+GKT  F   ++ +L +   S R     +++ PTRELA Q + V 
Sbjct: 122 PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVA 181

Query: 426 IAXGDHLNAKCHACIGGTN 482
                H +      IGG N
Sbjct: 182 EELLKHHSQTVSMVIGGNN 200


>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
           similar to ethylene-responsive RNA helicase GI:5669638
           from [Lycopersicon esculentum]; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
          Length = 501

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 428
           ++GRD+I  A++G+GKT ++ +  +  ++             L+LAPTRELA QIQ+   
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193

Query: 429 AXGDHLNAKCHACIGG 476
             G     K     GG
Sbjct: 194 KFGSSSKIKTTCIYGG 209


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 413
           ++G+DV+A+A++G+GKT  + + +LQ++   D+  ++     A IL P+REL QQ+
Sbjct: 81  LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136



 Score = 33.9 bits (74), Expect = 0.058
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291
           ++  ++F+++ L   L+R +   G EKP+ IQQ AI   L  KD +   K
Sbjct: 42  EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91


>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
           to p68 RNA helicase [Schizosaccharomyces pombe]
           GI:173419
          Length = 537

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 416
           + GRD+I  A++G+GKT  F I  +  +    ++            L+L+PTRELA QI 
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208

Query: 417 KVVIAXGDHLNAKCHACIGGTN 482
            V+   G+    K     GG++
Sbjct: 209 DVLREAGEPCGLKSICVYGGSS 230


>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 
          Length = 739

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
 Frame = +3

Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIAXG 437
           GRD++  A++G+GKT  F I IL+++       +     +I++PTRELA Q   V+   G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167

Query: 438 DHLNAKCHACIGG 476
                     IGG
Sbjct: 168 KFHKFSAGLLIGG 180


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
 Frame = +3

Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413
           C+ G+D + +A++GTGK+  F +    ++L+ +++      +    ALIL PTRELA QI
Sbjct: 362 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421

Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479
               K ++   D +  +    IGGT
Sbjct: 422 AAEGKALLKFHDGIGVQ--TLIGGT 444


>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
           RNA helicase [Arabidopsis thaliana] GI:3776023; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 563

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQ 416
           +QG+D++A+A++GTGKT  F +  ++ +        D        L++ PTRELA Q   
Sbjct: 115 LQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174

Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
           +  I    H +      IGGT +
Sbjct: 175 EANILLKYHPSIGVQVVIGGTKL 197


>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
           similar to RNA helicase GB:CAA09204 from [Arabidopsis
           thaliana]; identical to cDNA DEAD box RNA helicase, RH13
           GI:3776002
          Length = 832

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
 Frame = +3

Query: 252 NMPCIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 371
           N+   QG+DVI  A++G+GKT  F + ILQ+ +D   +          E Q         
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281

Query: 372 ALILAPTRELAQQIQKVVIAXGDHLNAKCHACIGG 476
           ALI+ PTRELA Q+ + +     +L+ K    +GG
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316


>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
           similarity to RNA helicase RH25 [Arabidopsis thaliana]
           GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH31
           GI:3776030
          Length = 522

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410
           ++G+DV+A+A++GTGKT  F +  ++ +        D       AL++ PTRELA Q
Sbjct: 89  LKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 39.9 bits (89), Expect = 9e-04
 Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410
           +QG+DV+A+A++GTGKT  F +  ++ +        D+       L++ PTRELA Q
Sbjct: 417 LQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473


>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
           to RNA helicase [Rattus norvegicus] GI:897915; contains
           Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
           Helicase conserved C-terminal domain
          Length = 760

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 413
           + GRDVI  A++G+GKTA F + ++  I     ++  +    +I APTRELA QI
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317



 Score = 31.9 bits (69), Expect = 0.24
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 142 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--ICLASKDAM 279
           D  + V+TF+D     +++  I    +EKP+AIQ +A  I L+ +D +
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
 Frame = +3

Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413
           C+ G+D + +A++GTGK+  F +    ++L+ +++      +     LIL PTRELA QI
Sbjct: 409 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468

Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479
               K ++   D +  +    IGGT
Sbjct: 469 AAEGKALLKNHDGIGVQ--TLIGGT 491


>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422
           RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA QI   
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248

Query: 423 VIAXGDHLNAKCHACIGGTNV 485
                     K     GGT +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269


>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
           similar to RNA helicase DBY protein [Mus musculus]
           GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
           protein 2) {Homo sapiens}; contains Pfam profiles
           PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain; identical to cDNA DEAD box
           RNA helicase, RH11 GI:3775998
          Length = 612

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422
           RD++A AQ+G+GKTA F   I+  I  D  +   +        A+IL+PTRELA QI   
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248

Query: 423 VIAXGDHLNAKCHACIGGTNV 485
                     K     GGT +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 413
           + G D++ +A++G GKT  F + IL+ +              R    L+L PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190

Query: 414 QKVVIAXGDHLNAKCHACIGG 476
                A G  L        GG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 37.5 bits (83), Expect = 0.005
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +3

Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 410
           P + G DV+  A++G+GKT  F   ++ +L ++  + R     L++ PTRELA Q
Sbjct: 187 PLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241


>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicase GB:6321111 from (S.
           cerevisiae)
          Length = 558

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAX 434
           +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI KV    
Sbjct: 54  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113

Query: 435 GDHL-NAKCHACIGGTNV 485
              L N      +GG  V
Sbjct: 114 VSTLPNVNSVLLVGGREV 131


>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 465

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = +3

Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIA 431
           +DV+  A +G+GKT  F +  ++ I  S        +   +I++PTREL+ QI KV  A
Sbjct: 55  KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARA 113


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELA 404
           I+G D + Q+ +G+GKT  + + IL +I             +    E QA+I+AP+REL 
Sbjct: 145 IKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELG 204

Query: 405 QQI-QKVVIAXGDHLNAKCHACIGGTN 482
            QI ++V    G          +GG N
Sbjct: 205 MQIVREVEKLLGPVHRRMVQQLVGGAN 231


>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
           helicase -Mus musculus,PIR2:I84741
          Length = 621

 Score = 36.3 bits (80), Expect = 0.011
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 416
           ++ + V+  + +G+GKT  + + I+Q +          T  R  + ++L PTREL++Q+ 
Sbjct: 147 MERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY 206

Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
           +V  +   H   +     GG+ +
Sbjct: 207 RVAKSISHHARFRSILVSGGSRI 229


>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 
          Length = 593

 Score = 35.9 bits (79), Expect = 0.014
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
 Frame = +3

Query: 231 FCNPA-TRNMPCIQG-RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 386
           FC P     +P +   +DV   A +G+GKT  F + +++ +  S        +   +I++
Sbjct: 38  FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97

Query: 387 PTRELAQQIQKVVIAXGDHL-NAKCHACIGGTNV 485
           PTREL+ QI  V       L N      +GG  V
Sbjct: 98  PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131


>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
           identical to GB:CAA09207, contains a DEAD/DEAH box
           family ATP-dependent helicas signature; identical to
           cDNA DEAD box RNA helicase, RH17 GI:3776008
          Length = 609

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 425
           + GRDV+  A +GTGKT  +   ++  +     +        AL++ PTREL  Q+ + +
Sbjct: 65  LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124


>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
           to RNA helicase involved in rRNA processing GB:6321267
           from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
           box domain
          Length = 541

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 410
           + GR+  A A +G+GKT  F   +L ++   S    +A+IL+P RELA Q
Sbjct: 176 LSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225


>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
           Pfam profile: PF00270 DEAD/DEAH box helicase
          Length = 781

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
 Frame = +3

Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQ 410
           P I G+  I   QSG+GKT  + + ++Q++          S   C + ++L PT ELA Q
Sbjct: 407 PVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466

Query: 411 I 413
           +
Sbjct: 467 V 467


>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
           helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
          Length = 542

 Score = 33.5 bits (73), Expect = 0.077
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQIQK 419
           + GRD+I  A +G+GKT  F + ++     ++I   I   +   AL++ P+RELA+Q   
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191

Query: 420 VV 425
           VV
Sbjct: 192 VV 193


>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 
          Length = 591

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 419
           + GRD+I  A +G+GKT  F      I++ +++   I   +    LI+ P+RELA+Q  +
Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240

Query: 420 VV 425
           VV
Sbjct: 241 VV 242


>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 704

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 184 KEELLRGIYAYGFEKPSAIQQRAICLAS-KDAMLSLKPSQELEKLLLSLYRFYNKSIQAF 360
           K +LLR   AY   +  A+Q   + LAS KD ML   PSQE  K L  L +  N S++ F
Sbjct: 307 KLKLLRSGCAYANSRIHAVQAEVLVLASGKDMML---PSQEEAKRLHGLLK--NCSVRCF 361


>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
           similar to RNA helicase GI:3776015 from [Arabidopsis
           thaliana]; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00270: DEAD/DEAH box
           helicase; matches EST OAO811-2
          Length = 581

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI 347
           + G+DVI  A++G+GKT  +   I+ Q+
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQL 142


>At3g10020.1 68416.m01202 expressed protein
          Length = 149

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 76  GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAI 240
           GP +  D      PP MD G  + D +QV ++ DD+ +  EL++G      E P+ +
Sbjct: 83  GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGV 137


>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 691

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +3

Query: 324 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIAXGDHLNAKCHACIGG 476
           +++ L+++  +++EC +A+ + P+   A Q++  + +  G+  NA+ H C  G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +1

Query: 31  SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 129
           S  R   D P   +   +GPS+ +G YDGP G   G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317



 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 40  RRSEDWPEDSK---NGPSKDQGSYDGP 111
           RR  D P   +   +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291


>At1g14180.2 68414.m01677 expressed protein
          Length = 242

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = -2

Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41
           +++  S+    G C+R   Q  P  SR  V     P   +     +M+  WN L N L  
Sbjct: 124 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 181

Query: 40  FQTNKTCFNLVPN 2
           F     C    PN
Sbjct: 182 FNAMTHCVQYAPN 194


>At1g14180.1 68414.m01676 expressed protein
          Length = 245

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
 Frame = -2

Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41
           +++  S+    G C+R   Q  P  SR  V     P   +     +M+  WN L N L  
Sbjct: 127 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 184

Query: 40  FQTNKTCFNLVPN 2
           F     C    PN
Sbjct: 185 FNAMTHCVQYAPN 197


>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 1290

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 24/95 (25%), Positives = 34/95 (35%)
 Frame = +1

Query: 34  SERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 213
           S+R+       +K  PS  +G          G  D+D        +D+N    L   + A
Sbjct: 632 SKRQRSSLLAGAKGLPSSQKGGQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAVDA 691

Query: 214 YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLL 318
              +KPS  + R   L   DA L        EK L
Sbjct: 692 ALRKKPSFGKNRV--LEQSDASLVANVDSSSEKTL 724


>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 376

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 375 LILAPTRELAQQIQKVVIAXGDHLNAKCHACIGGT 479
           LILA T +    + K ++  G ++NA    C GGT
Sbjct: 46  LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 154 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 14
           L P     + GP  EVH +N+L P M   +N ++ LL F +  K   N
Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 13   G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 114
            G N S+++   +  WP  + +G     GSY   P
Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204


>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 199

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 483 HWCHQCKHGI 454
           HWCH C+ GI
Sbjct: 10  HWCHTCRRGI 19


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,007
Number of Sequences: 28952
Number of extensions: 244870
Number of successful extensions: 891
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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