Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0344
(485 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 110 4e-25
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 108 2e-24
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 107 4e-24
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 105 2e-23
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 93 9e-20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 70 7e-13
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 70 7e-13
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 65 2e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 65 2e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 62 2e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 3e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 60 6e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 59 2e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 2e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 55 2e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 54 4e-08
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 54 4e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 53 9e-08
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 53 1e-07
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 51 4e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 51 4e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 50 6e-07
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 49 1e-06
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 49 1e-06
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 49 1e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 47 6e-06
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 46 1e-05
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 46 1e-05
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 44 4e-05
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 44 7e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 44 7e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 7e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 7e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 43 1e-04
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 43 1e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 43 1e-04
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 43 1e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 43 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 42 3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 5e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 5e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 40 7e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 40 7e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 40 9e-04
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 40 9e-04
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 39 0.002
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 39 0.002
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 39 0.002
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 39 0.002
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.004
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 38 0.005
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.006
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.006
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 37 0.006
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 36 0.011
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 36 0.014
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 36 0.019
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.033
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 35 0.033
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 33 0.077
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 32 0.24
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro... 29 1.3
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 29 2.2
At3g10020.1 68416.m01202 expressed protein 28 2.9
At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containi... 28 2.9
At1g76010.1 68414.m08825 expressed protein 28 3.8
At1g14180.2 68414.m01677 expressed protein 27 5.1
At1g14180.1 68414.m01676 expressed protein 27 5.1
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 6.7
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 27 6.7
At4g30790.1 68417.m04362 expressed protein 27 8.9
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 27 8.9
At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger) fa... 27 8.9
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 110 bits (265), Expect = 4e-25
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
+P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A
Sbjct: 71 VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRAL 130
Query: 435 GDHLNAKCHACIGGTNV 485
GD+L K HAC+GGT+V
Sbjct: 131 GDYLGVKVHACVGGTSV 147
Score = 62.9 bits (146), Expect = 1e-10
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +1
Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 108 bits (259), Expect = 2e-24
Identities = 50/77 (64%), Positives = 62/77 (80%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
+P +G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+KV+ A
Sbjct: 73 IPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRAL 132
Query: 435 GDHLNAKCHACIGGTNV 485
GD+L K AC+GGT+V
Sbjct: 133 GDYLGVKAQACVGGTSV 149
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +1
Query: 130 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGI 72
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 107 bits (257), Expect = 4e-24
Identities = 49/77 (63%), Positives = 62/77 (80%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
+P +G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTRELAQQI+KV+ A
Sbjct: 71 VPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRAL 130
Query: 435 GDHLNAKCHACIGGTNV 485
GD+ K HAC+GGT+V
Sbjct: 131 GDYQGVKVHACVGGTSV 147
Score = 63.7 bits (148), Expect = 6e-11
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +1
Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGI 70
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 105 bits (251), Expect = 2e-23
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
MP +QGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTRELA Q +K + A
Sbjct: 67 MPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAI 126
Query: 435 GDHLNAKCHACIGGTNV 485
G H N + HACIGG +V
Sbjct: 127 GLHANIQAHACIGGNSV 143
Score = 58.8 bits (136), Expect = 2e-09
Identities = 24/39 (61%), Positives = 33/39 (84%)
Frame = +1
Query: 139 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAV 66
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 93.1 bits (221), Expect = 9e-20
Identities = 41/77 (53%), Positives = 58/77 (75%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAX 434
+P ++GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+RELA Q +K + A
Sbjct: 54 VPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAI 113
Query: 435 GDHLNAKCHACIGGTNV 485
G H N + HACIGG ++
Sbjct: 114 GAHTNIQAHACIGGKSI 130
Score = 50.0 bits (114), Expect = 8e-07
Identities = 18/33 (54%), Positives = 29/33 (87%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
+++FDDM + +++LRG+Y YG++KPS IQQRA+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRAL 53
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.1 bits (164), Expect = 7e-13
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V G H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 444 LNAKCHACIGGTNV 485
L + GGT++
Sbjct: 226 LKIQVMVTTGGTSL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
F+D LK ELL GIY GFE+PS IQ+ +I +A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.1 bits (164), Expect = 7e-13
Identities = 33/74 (44%), Positives = 48/74 (64%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRD++A+A++GTGKTA F I +L++ID QA+I+ PTRELA Q +V G H
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 444 LNAKCHACIGGTNV 485
L + GGT++
Sbjct: 226 LKIQVMVTTGGTSL 239
Score = 41.5 bits (93), Expect = 3e-04
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
F+D LK ELL GIY GFE+PS IQ+ +I +A
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIA 165
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 444 LNAKCHACIGGTNV 485
LN + GGT++
Sbjct: 219 LNIQVMVTTGGTSL 232
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
F+D LK +LL+GIY GFEKPS IQ+ +I +A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/74 (41%), Positives = 47/74 (63%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ G D++A+A++GTGKT F I +L++ID + QA+IL PTRELA Q +V +
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 444 LNAKCHACIGGTNV 485
LN + GGT++
Sbjct: 219 LNIQVMVTTGGTSL 232
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
F+D LK +LL+GIY GFEKPS IQ+ +I +A
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIA 158
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 62.1 bits (144), Expect = 2e-10
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTRELA Q+ + A G
Sbjct: 93 LAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGSC 152
Query: 444 LNAKCHACIGGTNV 485
LN +C +GG ++
Sbjct: 153 LNLRCSVIVGGMDM 166
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 61.7 bits (143), Expect = 3e-10
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 444 L-NAKCHACIGGTNV 485
L + K GG N+
Sbjct: 141 LPDTKVSVFYGGVNI 155
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 61.7 bits (143), Expect = 3e-10
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
I G DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +
Sbjct: 81 ILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTY 140
Query: 444 L-NAKCHACIGGTNV 485
L + K GG N+
Sbjct: 141 LPDTKVSVFYGGVNI 155
Score = 32.3 bits (70), Expect = 0.18
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 255
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 60.5 bits (140), Expect = 6e-10
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDH 443
+ G D++A+A++GTGKT F I L++ID QA+IL PTRELA Q +V +
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 444 LNAKCHACIGGTNV 485
L + GGT++
Sbjct: 249 LKIEVMVTTGGTSL 262
Score = 44.0 bits (99), Expect = 5e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
F+D LK +LLRGIY GFEKPS IQ+ +I +A
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIA 188
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 58.8 bits (136), Expect = 2e-09
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 276 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXGDHL-NA 452
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI + +L +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDT 61
Query: 453 KCHACIGGTNV 485
K GG N+
Sbjct: 62 KVSVFYGGVNI 72
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.4 bits (135), Expect = 2e-09
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 10/78 (12%)
Frame = +3
Query: 255 MPCIQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRELA 404
+P +QGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTRELA
Sbjct: 134 VPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELA 193
Query: 405 QQIQKVVIAXGDHLNAKC 458
+Q++K + +L+ C
Sbjct: 194 KQVEKEIKESAPYLSTVC 211
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 55.2 bits (127), Expect = 2e-08
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 3/82 (3%)
Frame = +3
Query: 249 RNMPCI-QGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRELAQQIQK 419
+ MP I G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR+LA+Q K
Sbjct: 57 KTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLK 116
Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
G + + +GG ++
Sbjct: 117 FTKELGKFTDLRVSLLVGGDSM 138
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 54.4 bits (125), Expect = 4e-08
Identities = 25/55 (45%), Positives = 38/55 (69%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKVVIAXG 437
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTRELA Q +V+ G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 33.9 bits (74), Expect = 0.058
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 166 FDDMNLKEELLRGIYA-YGFEKPSAIQ 243
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 54.4 bits (125), Expect = 4e-08
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 6/82 (7%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419
P ++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTRELA+Q++K
Sbjct: 149 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
L+ C GGT +
Sbjct: 209 EFRESAPSLDTIC--LYGGTPI 228
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 53.2 bits (122), Expect = 9e-08
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRELAQQIQKVVIAX 434
+ GRD+ A A +G+GKTA F++ L+++ + + LIL PTRELA QI ++
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 435 GDHLNAKCHACIGGTNV 485
+ KC +GG +V
Sbjct: 262 AQFTDIKCGLIVGGLSV 278
Score = 32.3 bits (70), Expect = 0.18
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 160 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICLA 264
+TF ++NL LLR G++KP+ IQ I LA
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLA 201
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 52.8 bits (121), Expect = 1e-07
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRELAQQIQK 419
P ++GRD+I +A++GTGKT F I I+ +I R L+LAPTRELA+Q++K
Sbjct: 137 PAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
L+ C GGT +
Sbjct: 197 EFRESAPSLDTIC--LYGGTPI 216
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 51.2 bits (117), Expect = 4e-07
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRELAQ 407
++G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTRELA
Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
Query: 408 QIQKVVIAXGDHLNAKCHACIGG 476
QI + A G ++ +C +GG
Sbjct: 104 QIAEQFEALGADISLRCAVLVGG 126
Score = 33.9 bits (74), Expect = 0.058
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAM 279
++VV+TF ++ ++EEL++ G++ PS IQ A+ L KD +
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVI 50
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 51.2 bits (117), Expect = 4e-07
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 8/82 (9%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-----TSIRECQ---ALILAPTRELAQQIQK 419
+Q RDVI A++G+GKTA F + +L I + E + A+++APTRELAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 420 VVIAXGDHLNAKCHACIGGTNV 485
+ +L + + +GG ++
Sbjct: 408 ETVKFAHYLGFRVTSIVGGQSI 429
Score = 29.9 bits (64), Expect = 0.95
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 157 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAICL 261
+ ++++ L ELL+ + G++KPS IQ AI L
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.4 bits (115), Expect = 6e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQKV 422
GRD I AQ+G+GKT T+ + I I+ QA+I+ PTREL Q+ KV
Sbjct: 113 GRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 432 XGDHLNAKCHACIGG 476
G C GG
Sbjct: 253 FGRSSRISCTCLYGG 267
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 432 XGDHLNAKCHACIGG 476
G C GG
Sbjct: 253 FGRSSRISCTCLYGG 267
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
+QGRD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 432 XGDHLNAKCHACIGG 476
G C GG
Sbjct: 253 FGRSSRISCTCLYGG 267
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 47.2 bits (107), Expect = 6e-06
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +3
Query: 246 TRNMPCIQ-GRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQ 407
T+ +P I GRD I A++G+GKT F + +L+ I D E L++APTREL Q
Sbjct: 557 TQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQ 616
Query: 408 QIQKVVIAXGDHLNAKCHACIGGTNV 485
QI + L +C GG+ V
Sbjct: 617 QIHSDIRKFSKPLGIRCVPVYGGSGV 642
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 46.4 bits (105), Expect = 1e-05
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
+Q RD++A A++G+GKT + I +L+ R LILAPTRELA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 432 XGDHLNAKCHACIGG 476
G C GG
Sbjct: 530 FGRSSRISCTCLYGG 544
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 46.0 bits (104), Expect = 1e-05
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRELAQQIQKVVIA 431
+Q RD++A A++G+GKT + I LQ+I R L+L+PTRELA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 432 XGDHLNAKCHACIGG 476
G C GG
Sbjct: 324 FGKSSKISCACLYGG 338
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 44.4 bits (100), Expect = 4e-05
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 413
++GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 194 LEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
Query: 414 QKVVIAXGDHLNAKCHACIGGTNV 485
K GGT +
Sbjct: 254 HDEAKKFSYQTGVKVVVAYGGTPI 277
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 43.6 bits (98), Expect = 7e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 43.6 bits (98), Expect = 7e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRELAQQIQK 419
++GRD+I A++G+GKT + + L + R Q LILAPTRELA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 43.6 bits (98), Expect = 7e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419
+ G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 145 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 204
Query: 420 VVIAXGDHLNAKCHACIGG 476
G L K +GG
Sbjct: 205 QAKMLGKGLPFKTALVVGG 223
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 43.6 bits (98), Expect = 7e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRELAQQIQK 419
+ G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL Q++
Sbjct: 8 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 67
Query: 420 VVIAXGDHLNAKCHACIGG 476
G L K +GG
Sbjct: 68 QAKMLGKGLPFKTALVVGG 86
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQIQKVVIAXGDHLN 449
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q++ V A +
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAIAPAVG 122
Query: 450 AKCHACIGGTNV 485
+ +G +++
Sbjct: 123 LSVGSAVGQSSI 134
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 43.2 bits (97), Expect = 1e-04
Identities = 36/94 (38%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Frame = +3
Query: 240 PATRN-MPCIQ-GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 383
P RN +P + GRD++A AQ+G+GKTA F I+ I D I + A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 384 APTRELAQQIQKVVIAXGDHLNAKCHACIGGTNV 485
+PTRELA QI K GGT V
Sbjct: 231 SPTRELACQIHDEARKFSYQTGVKVVVAYGGTPV 264
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRELAQQIQKVVI 428
+ GRD I A++G+GKT F + +L+ I D E L++APTREL QQI +
Sbjct: 431 MSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIR 490
Query: 429 AXGDHLNAKCHACIGGTNV 485
L C GG+ V
Sbjct: 491 KFSKALGIICVPVYGGSGV 509
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQIQKVV 425
P ++G+DV+ A++G+GKT F ++ +L + S R +++ PTRELA Q + V
Sbjct: 122 PLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNVA 181
Query: 426 IAXGDHLNAKCHACIGGTN 482
H + IGG N
Sbjct: 182 EELLKHHSQTVSMVIGGNN 200
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 42.7 bits (96), Expect = 1e-04
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRELAQQIQKVVI 428
++GRD+I A++G+GKT ++ + + ++ L+LAPTRELA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 429 AXGDHLNAKCHACIGG 476
G K GG
Sbjct: 194 KFGSSSKIKTTCIYGG 209
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/56 (37%), Positives = 39/56 (69%), Gaps = 6/56 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRELAQQI 413
++G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+REL QQ+
Sbjct: 81 LEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 33.9 bits (74), Expect = 0.058
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 148 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI--CLASKDAMLSLK 291
++ ++F+++ L L+R + G EKP+ IQQ AI L KD + K
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRELAQQIQ 416
+ GRD+I A++G+GKT F I + + ++ L+L+PTRELA QI
Sbjct: 149 LDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQIS 208
Query: 417 KVVIAXGDHLNAKCHACIGGTN 482
V+ G+ K GG++
Sbjct: 209 DVLREAGEPCGLKSICVYGGSS 230
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.7 bits (91), Expect = 5e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Frame = +3
Query: 270 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELAQQIQKVVIAXG 437
GRD++ A++G+GKT F I IL+++ + +I++PTRELA Q V+ G
Sbjct: 108 GRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNKVG 167
Query: 438 DHLNAKCHACIGG 476
IGG
Sbjct: 168 KFHKFSAGLLIGG 180
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 5e-04
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Frame = +3
Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413
C+ G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTRELA QI
Sbjct: 362 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479
K ++ D + + IGGT
Sbjct: 422 AAEGKALLKFHDGIGVQ--TLIGGT 444
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 40.3 bits (90), Expect = 7e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELA-QQIQ 416
+QG+D++A+A++GTGKT F + ++ + D L++ PTRELA Q
Sbjct: 115 LQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAA 174
Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
+ I H + IGGT +
Sbjct: 175 EANILLKYHPSIGVQVVIGGTKL 197
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 40.3 bits (90), Expect = 7e-04
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 20/95 (21%)
Frame = +3
Query: 252 NMPCIQGRDVIAQAQSGTGKTATFSISILQQ-IDTSIR----------ECQ--------- 371
N+ QG+DVI A++G+GKT F + ILQ+ +D + E Q
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLR 281
Query: 372 ALILAPTRELAQQIQKVVIAXGDHLNAKCHACIGG 476
ALI+ PTRELA Q+ + + +L+ K +GG
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.9 bits (89), Expect = 9e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410
++G+DV+A+A++GTGKT F + ++ + D AL++ PTRELA Q
Sbjct: 89 LKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 39.9 bits (89), Expect = 9e-04
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRELAQQ 410
+QG+DV+A+A++GTGKT F + ++ + D+ L++ PTRELA Q
Sbjct: 417 LQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRELAQQI 413
+ GRDVI A++G+GKTA F + ++ I ++ + +I APTRELA QI
Sbjct: 263 LSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
Score = 31.9 bits (69), Expect = 0.24
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 142 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRA--ICLASKDAM 279
D + V+TF+D +++ I +EKP+AIQ +A I L+ +D +
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 39.1 bits (87), Expect = 0.002
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Frame = +3
Query: 261 CIQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRELAQQI 413
C+ G+D + +A++GTGK+ F + ++L+ +++ + LIL PTRELA QI
Sbjct: 409 CLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
Query: 414 Q---KVVIAXGDHLNAKCHACIGGT 479
K ++ D + + IGGT
Sbjct: 469 AAEGKALLKNHDGIGVQ--TLIGGT 491
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 423 VIAXGDHLNAKCHACIGGTNV 485
K GGT +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQIQKV 422
RD++A AQ+G+GKTA F I+ I D + + A+IL+PTRELA QI
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDE 248
Query: 423 VIAXGDHLNAKCHACIGGTNV 485
K GGT +
Sbjct: 249 AKKFSYQTGVKVVVAYGGTPI 269
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 37.9 bits (84), Expect = 0.004
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RECQALILAPTRELAQQI 413
+ G D++ +A++G GKT F + IL+ + R L+L PTRELA+Q+
Sbjct: 131 LDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQV 190
Query: 414 QKVVIAXGDHLNAKCHACIGG 476
A G L GG
Sbjct: 191 AADFDAYGGSLGLSSCCLYGG 211
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRELAQQ 410
P + G DV+ A++G+GKT F ++ +L ++ + R L++ PTRELA Q
Sbjct: 187 PLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 37.1 bits (82), Expect = 0.006
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIAX 434
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVAEPF 113
Query: 435 GDHL-NAKCHACIGGTNV 485
L N +GG V
Sbjct: 114 VSTLPNVNSVLLVGGREV 131
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 273 RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILAPTRELAQQIQKVVIA 431
+DV+ A +G+GKT F + ++ I S + +I++PTREL+ QI KV A
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARA 113
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 37.1 bits (82), Expect = 0.006
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRELA 404
I+G D + Q+ +G+GKT + + IL +I + E QA+I+AP+REL
Sbjct: 145 IKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELG 204
Query: 405 QQI-QKVVIAXGDHLNAKCHACIGGTN 482
QI ++V G +GG N
Sbjct: 205 MQIVREVEKLLGPVHRRMVQQLVGGAN 231
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 36.3 bits (80), Expect = 0.011
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI---------DTSIRECQALILAPTRELAQQIQ 416
++ + V+ + +G+GKT + + I+Q + T R + ++L PTREL++Q+
Sbjct: 147 MERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVY 206
Query: 417 KVVIAXGDHLNAKCHACIGGTNV 485
+V + H + GG+ +
Sbjct: 207 RVAKSISHHARFRSILVSGGSRI 229
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 35.9 bits (79), Expect = 0.014
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Frame = +3
Query: 231 FCNPA-TRNMPCIQG-RDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 386
FC P +P + +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 387 PTRELAQQIQKVVIAXGDHL-NAKCHACIGGTNV 485
PTREL+ QI V L N +GG V
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREV 131
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 35.5 bits (78), Expect = 0.019
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRELAQQIQKVV 425
+ GRDV+ A +GTGKT + ++ + + AL++ PTREL Q+ + +
Sbjct: 65 LSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETL 124
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRELAQQ 410
+ GR+ A A +G+GKT F +L ++ S +A+IL+P RELA Q
Sbjct: 176 LSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 34.7 bits (76), Expect = 0.033
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Frame = +3
Query: 258 PCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRELAQQ 410
P I G+ I QSG+GKT + + ++Q++ S C + ++L PT ELA Q
Sbjct: 407 PVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQ 466
Query: 411 I 413
+
Sbjct: 467 V 467
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 33.5 bits (73), Expect = 0.077
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRELAQQIQK 419
+ GRD+I A +G+GKT F + ++ ++I I + AL++ P+RELA+Q
Sbjct: 132 LSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYD 191
Query: 420 VV 425
VV
Sbjct: 192 VV 193
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 31.9 bits (69), Expect = 0.24
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRELAQQIQK 419
+ GRD+I A +G+GKT F I++ +++ I + LI+ P+RELA+Q +
Sbjct: 181 LAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYE 240
Query: 420 VV 425
VV
Sbjct: 241 VV 242
>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 704
Score = 29.5 bits (63), Expect = 1.3
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 184 KEELLRGIYAYGFEKPSAIQQRAICLAS-KDAMLSLKPSQELEKLLLSLYRFYNKSIQAF 360
K +LLR AY + A+Q + LAS KD ML PSQE K L L + N S++ F
Sbjct: 307 KLKLLRSGCAYANSRIHAVQAEVLVLASGKDMML---PSQEEAKRLHGLLK--NCSVRCF 361
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 264 IQGRDVIAQAQSGTGKTATFSISILQQI 347
+ G+DVI A++G+GKT + I+ Q+
Sbjct: 115 LSGKDVIVAAETGSGKTHGYLAPIIDQL 142
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 76 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAI 240
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGV 137
>At2g42580.1 68415.m05269 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 691
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/53 (24%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 324 SISILQQIDTSIREC-QALILAPTRELA-QQIQKVVIAXGDHLNAKCHACIGG 476
+++ L+++ +++EC +A+ + P+ A Q++ + + G+ NA+ H C G
Sbjct: 263 ALTALRRLGEAVKECLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSG 315
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +1
Query: 31 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 129
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 40 RRSEDWPEDSK---NGPSKDQGSYDGP 111
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At1g14180.2 68414.m01677 expressed protein
Length = 242
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = -2
Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41
+++ S+ G C+R Q P SR V P + +M+ WN L N L
Sbjct: 124 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 181
Query: 40 FQTNKTCFNLVPN 2
F C PN
Sbjct: 182 FNAMTHCVQYAPN 194
>At1g14180.1 68414.m01676 expressed protein
Length = 245
Score = 27.5 bits (58), Expect = 5.1
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = -2
Query: 214 RRICLSTILL*GSCHRRFRQLDP--SRCQVSQGPFPEVHRNYLDPSMAHFWNPLANLLTF 41
+++ S+ G C+R Q P SR V P + +M+ WN L N L
Sbjct: 127 QQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPS--QECFHVNMSFTWNVLTNQLQR 184
Query: 40 FQTNKTCFNLVPN 2
F C PN
Sbjct: 185 FNAMTHCVQYAPN 197
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 27.1 bits (57), Expect = 6.7
Identities = 24/95 (25%), Positives = 34/95 (35%)
Frame = +1
Query: 34 SERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 213
S+R+ +K PS +G G D+D +D+N L + A
Sbjct: 632 SKRQRSSLLAGAKGLPSSQKGGQTAESSDTSGVSDSDLSTTKNVKEDLNKGNRLRAAVDA 691
Query: 214 YGFEKPSAIQQRAICLASKDAMLSLKPSQELEKLL 318
+KPS + R L DA L EK L
Sbjct: 692 ALRKKPSFGKNRV--LEQSDASLVANVDSSSEKTL 724
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 375 LILAPTRELAQQIQKVVIAXGDHLNAKCHACIGGT 479
LILA T + + K ++ G ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -2
Query: 154 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 14
L P + GP EVH +N+L P M +N ++ LL F + K N
Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 13 G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 114
G N S+++ + WP + +G GSY P
Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204
>At3g10815.1 68416.m01302 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 199
Score = 26.6 bits (56), Expect = 8.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 483 HWCHQCKHGI 454
HWCH C+ GI
Sbjct: 10 HWCHTCRRGI 19
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,440,007
Number of Sequences: 28952
Number of extensions: 244870
Number of successful extensions: 891
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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