Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0338
         (661 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1IDF4 Cluster: Putative uncharacterized protein precur...    36   0.65 
UniRef50_Q8IAM3 Cluster: Wd repeat protein, putative; n=4; Plasm...    35   1.5  
UniRef50_Q86SJ2 Cluster: Amphoterin-induced protein 2 precursor;...    34   2.6  
UniRef50_Q8TIC6 Cluster: Predicted protein; n=1; Methanosarcina ...    33   6.1  

>UniRef50_A1IDF4 Cluster: Putative uncharacterized protein
           precursor; n=1; Candidatus Desulfococcus oleovorans
           Hxd3|Rep: Putative uncharacterized protein precursor -
           Candidatus Desulfococcus oleovorans Hxd3
          Length = 562

 Score = 36.3 bits (80), Expect = 0.65
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 322 ECANVRIRAYL-IFFFLWALLMFYKFILNIVVSRLLNNNSYQRTALFLVNIPPMLPTLI 495
           +CA V IR +L I FF++ + +F   +  IVV+ LL N + +   L LV +  M+P ++
Sbjct: 406 QCAPVSIRTFLRIKFFVYLVPLFVLTMTLIVVTNLLLNVAGEMMVLSLVTVSLMVPAIV 464


>UniRef50_Q8IAM3 Cluster: Wd repeat protein, putative; n=4;
            Plasmodium|Rep: Wd repeat protein, putative - Plasmodium
            falciparum (isolate 3D7)
          Length = 1121

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 24/70 (34%), Positives = 38/70 (54%)
 Frame = -3

Query: 401  NINL*NIKSAHKKKKIR*ALILTLAHSKHTSFQELPQYYLFIY*ITYNFSVLCMKCRDKE 222
            N+NL N+K++ KKK+   A IL+LA + + +  E+ +       I YN   LC+K   K 
Sbjct: 951  NVNLNNLKNSLKKKEYMKAFILSLALNNYENILEVYEN------IPYNIIPLCVKVLTKP 1004

Query: 221  PVFCIGNKFK 192
             +F + N  K
Sbjct: 1005 FLFILINFIK 1014


>UniRef50_Q86SJ2 Cluster: Amphoterin-induced protein 2 precursor;
           n=14; Amniota|Rep: Amphoterin-induced protein 2
           precursor - Homo sapiens (Human)
          Length = 522

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


>UniRef50_Q8TIC6 Cluster: Predicted protein; n=1; Methanosarcina
           acetivorans|Rep: Predicted protein - Methanosarcina
           acetivorans
          Length = 140

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 14/28 (50%), Positives = 21/28 (75%)
 Frame = +1

Query: 334 VRIRAYLIFFFLWALLMFYKFILNIVVS 417
           V I++ LI +FLW +LM + ++LNI VS
Sbjct: 81  VIIKSNLIGYFLWLILMIFAYLLNIEVS 108


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,183,792
Number of Sequences: 1657284
Number of extensions: 10933197
Number of successful extensions: 21752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21743
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)