BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0338 (661 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 26 5.5 SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.5 SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 7.3 >SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 25.8 bits (54), Expect = 5.5 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +1 Query: 127 FLH*RYIGESSNYSLLFRGGHFLNLF 204 F+H +++G +S++ LF+ G +LF Sbjct: 73 FIHQKHVGGNSDFQALFKKGELDSLF 98 >SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 681 Score = 25.8 bits (54), Expect = 5.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -3 Query: 659 NKPCQKAIXSPLKKRHPA 606 N PC + I S L++RHP+ Sbjct: 644 NTPCGRRILSKLERRHPS 661 >SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces pombe|chr 1|||Manual Length = 591 Score = 25.4 bits (53), Expect = 7.3 Identities = 9/23 (39%), Positives = 16/23 (69%) Frame = +2 Query: 125 TSYTSAISVSLRIIACCLEVDTF 193 TS+ A S+++ + CC ++DTF Sbjct: 348 TSFIVAFSLAILYLFCCPDLDTF 370 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,555,795 Number of Sequences: 5004 Number of extensions: 51613 Number of successful extensions: 87 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 87 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 299817502 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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