Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0338
         (661 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095477-1|AAH95477.1|  522|Homo sapiens AMIGO2 protein protein.       34   0.39 
BC047595-1|AAH47595.1|  522|Homo sapiens adhesion molecule with ...    34   0.39 
AY454159-1|AAR83271.1|  522|Homo sapiens DEGA/AMIGO-2 precursor ...    34   0.39 
AY237005-1|AAO48946.1|  522|Homo sapiens transmembrane protein A...    34   0.39 
AB080610-1|BAC81189.1|  522|Homo sapiens alivin 1 protein.             34   0.39 

>BC095477-1|AAH95477.1|  522|Homo sapiens AMIGO2 protein protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


>BC047595-1|AAH47595.1|  522|Homo sapiens adhesion molecule with
           Ig-like domain 2 protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


>AY454159-1|AAR83271.1|  522|Homo sapiens DEGA/AMIGO-2 precursor
           protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


>AY237005-1|AAO48946.1|  522|Homo sapiens transmembrane protein
           AMIGO2 protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


>AB080610-1|BAC81189.1|  522|Homo sapiens alivin 1 protein.
          Length = 522

 Score = 34.3 bits (75), Expect = 0.39
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 40  SSKWKDLKNSVIN*HTSLCLKLLYSYHFHFLH*RYIGESSNYSLLFRGGHFLNLFPI 210
           S+K K +KN+V      L + LLY+ H  +L     G  S    L+  G+FL  FP+
Sbjct: 126 SNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPM 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,411,274
Number of Sequences: 237096
Number of extensions: 1664080
Number of successful extensions: 2222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2222
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)