Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0336
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1D1B3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_A7KAJ9 Cluster: Atg15p; n=1; Pichia angusta|Rep: Atg15p...    34   3.4  

>UniRef50_Q1D1B3 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 555

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 224 PTFAPTLFSRCTRWASGVGAYVGANVWSRRQR 129
           P  AP L S C  W  G GA +GA +W RR+R
Sbjct: 520 PEPAPRLPSSCWGWMGGAGAGLGAWLWRRRRR 551


>UniRef50_A7KAJ9 Cluster: Atg15p; n=1; Pichia angusta|Rep: Atg15p -
           Pichia angusta (Yeast) (Hansenula polymorpha)
          Length = 536

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 228 LAVECGCSRLSTCWGFAQSCCNTRQVCMSRCLHQQTRHP 344
           L   C C+R+S+ W     C      C   CL Q+ R P
Sbjct: 242 LLFSCCCARVSSLWKTVCDCYEESYTCNQNCLEQELRRP 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,730,645
Number of Sequences: 1657284
Number of extensions: 10082959
Number of successful extensions: 24710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24699
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)