Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0336
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    28   1.0  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    27   1.8  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   4.1  

>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +3

Query: 228 LAVECGCSRLSTCWGFAQSCCNTRQVCMSRCLHQQTR 338
           L   C C+R+S  W     C      C   CL  + +
Sbjct: 216 LLFSCCCARVSWAWSTVCGCYKNTYTCSQTCLEDEVQ 252


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/51 (33%), Positives = 19/51 (37%)
 Frame = -3

Query: 351 DDAGGEFVDEDIATCTLDAYCNRTEQSPNMWTVANTHTRRPTTNICSNAIF 199
           DD G   VDE    C  D Y N     PNM  + N          C + IF
Sbjct: 2   DDEGARKVDEKCPLCQADRYLN-----PNMKLLINPECYHKMCESCVDRIF 47


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 222 W*LAVECGCSRLSTCWGFAQSCCNTRQVCMSRCLHQQTRHPHH 350
           W + + CG +    C+  A S  ++ +V  SRC     + PH+
Sbjct: 28  WPVTLPCGGTVCRKCFRNAYSSESSGKVSPSRCCFYNHKKPHY 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,301
Number of Sequences: 5004
Number of extensions: 41387
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)