Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0336
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22171| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7)             29   2.5  
SB_5640| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)              28   7.6  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      28   7.6  

>SB_22171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 220

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 332 LLMKTSRHAHLTRIATGLSKAPTCGQSRTPTLDGQL 225
           LLM T +  +  +IA+ L     CG  RTP L GQ+
Sbjct: 179 LLMWTDQELYSNKIASRLGSHLLCGALRTPQLVGQI 214


>SB_4157| Best HMM Match : Ribosomal_L32p (HMM E-Value=2.7)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 341 VASLLMKTSRHAHLTRIATGLSKAPTCGQSRTPTLDGQLPTFAPTLF 201
           V +LL  TSR A  TR    + + P    S   T++  +P    TLF
Sbjct: 221 VTNLLSSTSRRARYTRSECNIIRRPEVSCSTVQTVEPGIPEVNATLF 267


>SB_5640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 107 ASDSGRRYVDAGSTRWPQHRLQRHSPN 187
           A + GRR +   +  +P+ +L RHSPN
Sbjct: 28  AEEEGRRTLPETTPTFPEQKLYRHSPN 54


>SB_23195| Best HMM Match : zf-C3HC4 (HMM E-Value=1.3e-10)
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 238 SVGVRDCPHVGALLSPVAIRVKCACRDV 321
           SVG+  CPH G  +S  ++  + +CR V
Sbjct: 302 SVGIELCPHDGMRISSGSVGTRNSCRSV 329


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +3

Query: 219 CW*LAVECGCSRLSTCWGFAQSCCNTRQVCMS-RCLHQQTRHPH 347
           C   AV   CS    C      CC+ R VC S R  H   R PH
Sbjct: 364 CVAYAVVVCCSCRVACCSCRVVCCSCRVVCCSCRVAHAVLRVPH 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,571
Number of Sequences: 59808
Number of extensions: 349450
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)