Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0336
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33230.1 68414.m04106 expressed protein                             30   1.5  
At4g10430.3 68417.m01715 expressed protein                             28   4.7  
At4g10430.2 68417.m01713 expressed protein                             28   4.7  
At4g10430.1 68417.m01714 expressed protein                             28   4.7  
At2g23070.1 68415.m02750 casein kinase II alpha chain, putative ...    28   6.2  
At5g54130.1 68418.m06739 calcium-binding EF hand family protein ...    27   8.2  

>At1g33230.1 68414.m04106 expressed protein
          Length = 347

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 350 MMRVASLLMKTSRHAHL-TRIATGLSKAPTCGQSRTPTLDGQLPTFAPTLFSRCTRWASG 174
           M  VA LL    +   L TRIA G +K        T  +DGQL    P LF+       G
Sbjct: 229 MQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLLLLFPILFT-----LQG 283

Query: 173 VGAYVG 156
             AYVG
Sbjct: 284 FEAYVG 289


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 350 MMRVASLLMKTSRHAHL-TRIATGLSKAPTCGQSRTPTLDGQLPTFAPTLF 201
           M  VA LL    +   L TRIA G +K        T  +DGQL    P LF
Sbjct: 228 MQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILF 278


>At4g10430.2 68417.m01713 expressed protein
          Length = 271

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 350 MMRVASLLMKTSRHAHL-TRIATGLSKAPTCGQSRTPTLDGQLPTFAPTLF 201
           M  VA LL    +   L TRIA G +K        T  +DGQL    P LF
Sbjct: 152 MQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILF 202


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -1

Query: 350 MMRVASLLMKTSRHAHL-TRIATGLSKAPTCGQSRTPTLDGQLPTFAPTLF 201
           M  VA LL    +   L TRIA G +K        T  +DGQL    P LF
Sbjct: 228 MQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLCPILF 278


>At2g23070.1 68415.m02750 casein kinase II alpha chain, putative
           similar to casein kinase II, alpha chain (CK II) [Zea
           mays] SWISS-PROT:P28523; contains protein kinase domain,
           Pfam:PF00069
          Length = 432

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 318 IATCTLDAYCN--RTEQSPNMWTVANTHTRRPTTNICSN 208
           + T  L+AY N  R E  PN+ ++   H+R+P T   ++
Sbjct: 342 LGTDELNAYLNKYRIELDPNLTSLVGRHSRKPWTKFINS 380


>At5g54130.1 68418.m06739 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 232

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 113 DSGRRYVDAGSTRWPQHRLQRHSPNVC 193
           D+  RY D+ + +W  HR   H  N+C
Sbjct: 31  DTAHRYTDSDAHKWVSHR--NHRGNIC 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,897,093
Number of Sequences: 28952
Number of extensions: 221309
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)