Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0325
         (313 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   0.18 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    25   0.18 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    25   0.18 
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   1.3  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   1.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   3.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   4.0  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   5.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    20   6.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    20   6.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    20   6.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    20   6.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    20   6.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   6.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           20   6.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    20   6.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    20   6.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 25.0 bits (52), Expect = 0.18
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 171 PPSFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 22
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 216 PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 265



 Score = 23.8 bits (49), Expect = 0.43
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 GMTPPPAIVAFMRLSNSSSP 76
           G+ PP  I A +  SNS+SP
Sbjct: 315 GLIPPEPISASLSTSNSNSP 334


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 25.0 bits (52), Expect = 0.18
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 171 PPSFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 22
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 5   PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 54



 Score = 23.8 bits (49), Expect = 0.43
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 GMTPPPAIVAFMRLSNSSSP 76
           G+ PP  I A +  SNS+SP
Sbjct: 104 GLIPPEPISASLSTSNSNSP 123


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 25.0 bits (52), Expect = 0.18
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = -2

Query: 171 PPSFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASCKCRGVIRFTFKSL 22
           P  FP         +P PA  +    SN+SS L  +C   G   FT K L
Sbjct: 5   PAEFPTTSSSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQL 54



 Score = 23.8 bits (49), Expect = 0.43
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 135 GMTPPPAIVAFMRLSNSSSP 76
           G+ PP  I A +  SNS+SP
Sbjct: 104 GLIPPEPISASLSTSNSNSP 123


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 232 SKCSIFWSSSXLKFKR-GCTRPAFFPNERFVYVWDD 128
           SKC +FW+    +  R  C+    +  E  V +W D
Sbjct: 106 SKCDVFWNCWNGEASRYQCSPGLAYDREARVCMWAD 141


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -1

Query: 232 SKCSIFWSSSXLKFKR-GCTRPAFFPNERFVYVWDD 128
           SKC +FW+    +  R  C+    +  E  V +W D
Sbjct: 106 SKCDVFWNCWNGEASRYQCSPGLAYDREARVCMWAD 141


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 160 PNERFVYVWDDASASDSCFYEAVQFF 83
           P+ER  Y W + +A  +      +FF
Sbjct: 53  PDERITYSWTEINAFANVSPSKTKFF 78


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 160 PNERFVYVWDDASASDSCFYEAVQFF 83
           P+ER  Y W + +A  +      +FF
Sbjct: 53  PDERITYSWTEINAFANVSPPKTKFF 78


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +1

Query: 121 RRRHPTHTQISHWERRRVWCTP 186
           RR H  HT  SH  R     TP
Sbjct: 276 RRTHTRHTTTSHNTRGTPRTTP 297


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -2

Query: 171 PPSFPMRDLCMCGMTPPPAIVAFMRLSNSSSPLIASC 61
           P  FP         +P PA  +    SN+SS L  +C
Sbjct: 216 PAEFPTTSSSSALESPDPASRSSCLGSNTSSMLSLNC 252


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 291 IXVTQFWENDLCSVLRRPGYQNAVYFGH 208
           + VT +   D C+VLR   + N     H
Sbjct: 497 VFVTTYLMFDYCTVLRVQRFNNYQSLAH 524


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 7/21 (33%), Positives = 9/21 (42%)
 Frame = -3

Query: 281 PNSGKMICAVCYDGPGIKMQY 219
           PN+       CY  P +  QY
Sbjct: 32  PNANSTYPPACYSPPQVAPQY 52


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,489
Number of Sequences: 336
Number of extensions: 1838
Number of successful extensions: 21
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)