Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0325
(313 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 98 2e-22
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|... 75 2e-15
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|... 70 7e-14
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida... 26 1.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 2.6
SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi... 25 3.5
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 4.6
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 24 6.1
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 24 6.1
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 23 8.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 23 8.1
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 98.3 bits (234), Expect = 2e-22
Identities = 45/52 (86%), Positives = 51/52 (98%)
Frame = +2
Query: 2 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 157
ELAGNA+KDLKVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 106 ELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157
>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 74.9 bits (176), Expect = 2e-15
Identities = 37/62 (59%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +2
Query: 2 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKEGGSG 178
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I+ L+ K+ G G
Sbjct: 66 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKG 125
Query: 179 AP 184
P
Sbjct: 126 KP 127
>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
3|||Manual
Length = 132
Score = 70.1 bits (164), Expect = 7e-14
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 2 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKEGGSG 178
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I+ L+ K G
Sbjct: 66 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSGRT 125
Query: 179 APP 187
P
Sbjct: 126 GKP 128
>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
imidazole acetol phosphate transaminase
His3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 1.5
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 20 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 124
+K+L + K +TP ++ + + DE +DSLI+ + G
Sbjct: 69 NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.0 bits (52), Expect = 2.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 111 LSLAEASSHTYTNLSLGKKAGLVHPRLNFKXEDDQN 218
LSL +++H +T+ L + G+VH + F+ +DD N
Sbjct: 2246 LSLPSSNNH-WTSPFLAQNVGIVHLKA-FEFDDDDN 2279
>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
Pin1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 175
Score = 24.6 bits (51), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 199 LKFKRGCTRPAFFPNERFVYVWDDASASD 113
+K R RP FF E +W+ +A+D
Sbjct: 12 VKISRSRNRPYFFNTETHESLWEPPAATD 40
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 24.2 bits (50), Expect = 4.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 81 SPLIASCKCRGVIRF 37
SPL CKC G IR+
Sbjct: 19 SPLFHPCKCTGSIRY 33
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 23.8 bits (49), Expect = 6.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 195 NLNGGAPDPPSFPMRDL 145
+L GG P+P FP+R++
Sbjct: 40 SLAGGLPNPEYFPIREM 56
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 23.8 bits (49), Expect = 6.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 2 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPH 139
+L + DLK +I + + GDE L+ + G G IPH
Sbjct: 34 DLESENAYDLKFSQIQSSTVY-ELTGDETLNLKFTCILNGTGAIPH 78
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 23.4 bits (48), Expect = 8.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 115 RWRRRHPTHTQISHWERRRVW 177
RW + P+ TQ+S +RR W
Sbjct: 218 RWDQAPPSVTQVSTTKRRSRW 238
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 80 DEELDSLIKATIAGGGVIPHI 142
+ LD ++ +IAGGG+ H+
Sbjct: 326 ENSLDDVLLVSIAGGGLDTHV 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,367,198
Number of Sequences: 5004
Number of extensions: 26746
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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