Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0325
         (313 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   0.86 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   0.86 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   2.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   8.0  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 105 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 1
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 276 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 310


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 0.86
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 105 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 1
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 244 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 278


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 208 SSXLKFKRGCTRPAFFPNERFVYVWDDAS-ASDSCFYEAVQFFISSNSKL 62
           SS ++++  C+R  +FPNE +     D++ A      ++  FF ++ S L
Sbjct: 111 SSRMEYE--CSRIDYFPNEEYSPDPSDSTMAIPYAVTKSAMFFFAATSLL 158


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 87  NWTAS*KQLSLAEASSHTYTNLSLGKKAG 173
           +WT +  Q+SLA  ++  + +LS   K+G
Sbjct: 171 SWTFNGDQVSLALYNNKNFVDLSDYWKSG 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,895
Number of Sequences: 438
Number of extensions: 2254
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)