Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0320
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    25   0.43 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.0  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.3  

>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 328 MKIRFCIFIHSRRINRCNFSQF 393
           M  R CI I S R N  NFS+F
Sbjct: 1   MSTRICIPISSGRTNGSNFSKF 22


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 557 TIFXWSKYXHFFHXNFLRFSLGNYLGRYSRLSQ 655
           T+  +  Y HFF+   L       L RY  L++
Sbjct: 151 TVEYFQNYIHFFYQLLLYLITDMILMRYKELNR 183


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +2

Query: 503 PLLQAFH*ILIY*KFNFFTIFXWSKYXH 586
           P+LQ F  I  Y     +  + WS   H
Sbjct: 131 PVLQLFLYIFTYLSVTCYVTYAWSPIDH 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,129
Number of Sequences: 336
Number of extensions: 1823
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)