Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0320
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    88   1e-18
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.4  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   4.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
 Frame = +2

Query: 257 TGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVV 433
           TGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VV
Sbjct: 322 TGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVV 381

Query: 434 AHFHYVLS 457
           AHFHYVLS
Sbjct: 382 AHFHYVLS 389



 Score = 86.6 bits (205), Expect = 3e-18
 Identities = 40/85 (47%), Positives = 54/85 (63%)
 Frame = +3

Query: 15  F*FFGHPEVYILILPGFGIISHIXPQERGKKETFXXXXXXXXXXXXXXXXFIV*AHHIFT 194
           F FFGHPEVYILI+P FG++SHI P     K  F                 +V +HH+FT
Sbjct: 242 FWFFGHPEVYILIMPAFGVVSHIIPS-LAHKPIFGKEGMLWAMLSIALLGLMVWSHHLFT 300

Query: 195 VGIDIDTRAYFTSATIIIAVQQELK 269
           VG+D+DTRAYF++AT++IA+   +K
Sbjct: 301 VGLDVDTRAYFSAATMVIAIPTGIK 325


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 477  LLGDLLTEILYYRPFIKFLYTK--NSIFLQYXIGVN 578
            ++GD  TEI Y   F+++   K  NS  L++ + +N
Sbjct: 2708 IVGDYPTEIKYLHQFVEYFAQKSPNSCALEFALDIN 2743


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 587 FFHXNFLRFSLGNYLGRYSRLSQTHIF 667
           +FH  +LRFSL NY   Y  ++ T IF
Sbjct: 71  YFHRFYLRFSLKNY--HYYEVAATCIF 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,918
Number of Sequences: 5004
Number of extensions: 28716
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)