Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0320
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1243 - 25527523-25527960,25527993-25528604                       28   6.0  
05_06_0251 + 26687833-26688120,26689288-26689365,26690499-266905...    28   7.9  

>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 95  KRKKRNFWLFRNNLCYTSNWVIRIYCLS 178
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


>05_06_0251 +
           26687833-26688120,26689288-26689365,26690499-26690580,
           26691155-26691195,26691973-26692143,26693586-26693813,
           26694237-26694638
          Length = 429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 62  IWYNFSYYXTRKRKKRNFWLFRNN 133
           IW  F+   T K K+ +FW+F+ +
Sbjct: 55  IWPKFAVALTNKEKEEDFWVFKGS 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,715,853
Number of Sequences: 37544
Number of extensions: 141240
Number of successful extensions: 245
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)