Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0320
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  103   2e-22
SB_28566| Best HMM Match : PCI (HMM E-Value=1.8)                       29   4.6  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      28   8.0  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  103 bits (246), Expect = 2e-22
 Identities = 58/129 (44%), Positives = 76/129 (58%)
 Frame = +2

Query: 257 TGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTYYVVA 436
           TGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVA
Sbjct: 20  TGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVA 79

Query: 437 HFHYVLSXXXXXXXXXXXXXXXPLLQAFH*ILIY*KFNFFTIFXWSKYXHFFHXNFLRFS 616
           HFHYVLS                 +  +    +Y K +F+ +F       FF  +FL   
Sbjct: 80  HFHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNIT-FFPQHFL--G 136

Query: 617 LGNYLGRYS 643
           L  +  RYS
Sbjct: 137 LAGFPRRYS 145



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +3

Query: 201 IDIDTRAYFTSATIIIAVQQELK 269
           +++DTRAYFT+AT+IIAV   +K
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIK 23


>SB_28566| Best HMM Match : PCI (HMM E-Value=1.8)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +3

Query: 195 VGIDIDTRAYFTSATIIIAVQQELKFLDD*LQYMELKLIITLIFYE 332
           VG+ +DT+ Y  +      + +ELK LDD +  +E++L+ + +++E
Sbjct: 106 VGLYLDTKQYTEALHTGSKLLKELKKLDDKVLLVEVQLLESKVYHE 151


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 26  WTS*SLYFNFTRIWYNFSYYXTRKRKKRNFWLFRNNLCYTSNWVI 160
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,999,700
Number of Sequences: 59808
Number of extensions: 176464
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)