Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0316
(372 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2; Endopterygot... 137 7e-32
UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96; Eukaryo... 112 2e-24
UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70; Eukaryo... 109 2e-23
UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;... 86 2e-16
UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal ... 85 3e-16
UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5; E... 75 4e-13
UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL... 72 3e-12
UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1; L... 71 9e-12
UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3; Trich... 69 4e-11
UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1; ... 67 1e-10
UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium c... 65 3e-10
UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974, w... 64 8e-10
UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lambli... 64 8e-10
UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1, pu... 64 1e-09
UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal ... 62 3e-09
UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2; Ol... 62 4e-09
UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n... 61 7e-09
UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2; Scleroti... 60 1e-08
UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9; Euryarc... 59 3e-08
UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1; Encephal... 58 4e-08
UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13; Euryar... 58 4e-08
UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4; Thermop... 57 1e-07
UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1; Nanoarc... 53 1e-06
UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2; Euryarc... 52 3e-06
UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3; Archaea... 49 2e-05
UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9; Archaea... 48 7e-05
UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular org... 44 0.001
UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2; Cryptomo... 42 0.004
UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8; Archaea... 38 0.058
UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia b... 37 0.10
UniRef50_UPI0000F1F89E Cluster: PREDICTED: similar to KIAA2022 p... 32 3.8
UniRef50_A1IE46 Cluster: ABC-type transport system involved in r... 32 3.8
UniRef50_Q9ULG1 Cluster: Putative DNA helicase INO80 complex hom... 32 3.8
UniRef50_UPI000069DD10 Cluster: Mastermind-like protein 3 (Mam-3... 31 5.0
UniRef50_Q0VPC9 Cluster: ATP-dependent helicase HrpA; n=1; Alcan... 31 8.8
UniRef50_Q8KFS9 Cluster: tRNA pseudouridine synthase B; n=10; Ch... 31 8.8
>UniRef50_Q5MGK5 Cluster: Ribosomal protein 23; n=2;
Endopterygota|Rep: Ribosomal protein 23 - Lonomia
obliqua (Moth)
Length = 274
Score = 137 bits (331), Expect = 7e-32
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
DK+QEIN TKQAVIFLRR+KAWSD+L VYKSQRLRAGKGKMRNRRR+ RKGPLII+NKDQ
Sbjct: 21 DKIQEINKTKQAVIFLRRIKAWSDVLKVYKSQRLRAGKGKMRNRRRLHRKGPLIIYNKDQ 80
Query: 182 GLTRAFRNIPG 214
GLTR+FRNIPG
Sbjct: 81 GLTRSFRNIPG 91
Score = 71.3 bits (167), Expect = 5e-12
Identities = 29/35 (82%), Positives = 33/35 (94%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
H+GRF+IWTQSAF RLD +FGSWKTPSK+KKNFNL
Sbjct: 110 HVGRFMIWTQSAFERLDAIFGSWKTPSKEKKNFNL 144
>UniRef50_P09180 Cluster: 60S ribosomal protein L4; n=96;
Eukaryota|Rep: 60S ribosomal protein L4 - Drosophila
melanogaster (Fruit fly)
Length = 401
Score = 112 bits (270), Expect = 2e-24
Identities = 49/71 (69%), Positives = 62/71 (87%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D+VQ++ TKQAVIFLRRLK W+DI VYKSQR RAG+G MR+RRRI R+GPL++++KD+
Sbjct: 159 DEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMRDRRRIARRGPLVVYDKDE 218
Query: 182 GLTRAFRNIPG 214
GL +AFRNIPG
Sbjct: 219 GLRKAFRNIPG 229
Score = 59.7 bits (138), Expect = 2e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
H+GRFVIWT+SAF RL+ LFG+WK PS KK +NL
Sbjct: 248 HVGRFVIWTESAFARLNDLFGTWKKPSTLKKGYNL 282
>UniRef50_P36578 Cluster: 60S ribosomal protein L4; n=70;
Eukaryota|Rep: 60S ribosomal protein L4 - Homo sapiens
(Human)
Length = 427
Score = 109 bits (262), Expect = 2e-23
Identities = 48/71 (67%), Positives = 60/71 (84%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
DKV+ TK+AV+ L++LKAW+DI VY SQR+RAGKGKMRNRRRIQR+GP II+N+D
Sbjct: 156 DKVEGYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDN 215
Query: 182 GLTRAFRNIPG 214
G+ +AFRNIPG
Sbjct: 216 GIIKAFRNIPG 226
Score = 51.6 bits (118), Expect = 4e-06
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
H+GRF IWT+SAF +LD L+G+W+ + K N+NL
Sbjct: 245 HVGRFCIWTESAFRKLDELYGTWRKAASLKSNYNL 279
>UniRef50_Q00UB0 Cluster: Ribosomal protein RPL1/RPL2/RL4L4; n=1;
Ostreococcus tauri|Rep: Ribosomal protein
RPL1/RPL2/RL4L4 - Ostreococcus tauri
Length = 404
Score = 86.2 bits (204), Expect = 2e-16
Identities = 38/71 (53%), Positives = 54/71 (76%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D I T +AV L++L A++DI V S+ +R+GKGKMRNRR +QR+GPL+++++D
Sbjct: 159 DSASSIKKTAKAVELLKQLGAYADIEKVKASRNVRSGKGKMRNRRYVQRRGPLVVYSEDN 218
Query: 182 GLTRAFRNIPG 214
G+TRAFRNIPG
Sbjct: 219 GVTRAFRNIPG 229
Score = 43.6 bits (98), Expect = 0.001
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNF 366
H+GRF+IWT+SAF +LD +FG+ + S KK +
Sbjct: 248 HVGRFIIWTKSAFEKLDSIFGTSTSKSASKKGW 280
>UniRef50_UPI00005A2ACC Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 248
Score = 85.4 bits (202), Expect = 3e-16
Identities = 38/64 (59%), Positives = 50/64 (78%)
Frame = +2
Query: 5 KVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG 184
KV+ TK+ V+ L++LKAW+DI VY SQR+RAGKGKMRNRR IQR+G II+N+D G
Sbjct: 98 KVEGYKKTKEEVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRPIQRRGSCIIYNEDNG 157
Query: 185 LTRA 196
+ +A
Sbjct: 158 IIKA 161
>UniRef50_UPI0000499FAF Cluster: 60S ribosomal protein L4; n=5;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L4 - Entamoeba histolytica HM-1:IMSS
Length = 431
Score = 74.9 bits (176), Expect = 4e-13
Identities = 35/70 (50%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 VQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIF-NKDQG 184
+ I TKQAV L+++ A+SD+L V S+ +RAG+GKMR R+ +RKGPL+++ N D
Sbjct: 159 ISVIKKTKQAVYLLKKINAYSDVLKVIASKTVRAGQGKMRGRKIKERKGPLVVYGNDDLQ 218
Query: 185 LTRAFRNIPG 214
+AFRNIPG
Sbjct: 219 AVKAFRNIPG 228
Score = 43.6 bits (98), Expect = 0.001
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
H+GRF+IWT+SAF +L+ +FG+ K ++ K F +
Sbjct: 247 HIGRFIIWTESAFKKLNTIFGTQKKMAQGKSGFRI 281
>UniRef50_Q1KYM6 Cluster: RPL4; n=1; Streblomastix strix|Rep: RPL4 -
Streblomastix strix
Length = 492
Score = 72.1 bits (169), Expect = 3e-12
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D V++I TK+AV L LKA D+ +S+R+R G GK RNRR QR+G LI+ ++++
Sbjct: 156 DDVEQIKKTKEAVKVLAALKASDDVKHSAESKRIRVGSGKARNRRYTQRRGVLIVHDQNE 215
Query: 182 GLTRAFRNIPG 214
GL AFRNI G
Sbjct: 216 GLANAFRNISG 226
Score = 37.9 bits (84), Expect = 0.058
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGS 333
HLGRF+IWT+ A+ +LD L+G+
Sbjct: 245 HLGRFIIWTEGAYKKLDKLYGT 266
>UniRef50_Q4FXU6 Cluster: Ribosomal protein L1a, putative; n=1;
Leishmania major strain Friedlin|Rep: Ribosomal protein
L1a, putative - Leishmania major strain Friedlin
Length = 432
Score = 70.5 bits (165), Expect = 9e-12
Identities = 33/71 (46%), Positives = 49/71 (69%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D +Q TK+A+ FL+ + A D+ V S+ +RAG+GKMRNRR + R+GP+++ ++
Sbjct: 155 DSIQGYEKTKEAMAFLKAIAAIDDVNRVNDSREIRAGRGKMRNRRYVARRGPMLVMPNNK 214
Query: 182 GLTRAFRNIPG 214
G TRAFRNI G
Sbjct: 215 G-TRAFRNIFG 224
>UniRef50_A2E1Z6 Cluster: Ribosomal protein, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein,
putative - Trichomonas vaginalis G3
Length = 370
Score = 68.5 bits (160), Expect = 4e-11
Identities = 31/71 (43%), Positives = 45/71 (63%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D VQEI T+ AV L+++ + D+ V R+ KGK R +KGPL+I+N+D+
Sbjct: 153 DAVQEIKRTRDAVELLKKVGVYGDVQRVLDGSVHRSSKGKFRRAAYKTKKGPLVIYNEDK 212
Query: 182 GLTRAFRNIPG 214
G+ +AFRNIPG
Sbjct: 213 GIVKAFRNIPG 223
>UniRef50_Q0U8Q3 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 349
Score = 66.9 bits (156), Expect = 1e-10
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Frame = +2
Query: 17 INXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG---L 187
I T AV L+ + A +D S++LRAGKGK+R RR QR+GPL+I+N D+ L
Sbjct: 140 IRKTSAAVALLKAVGAGADCEKAKNSRKLRAGKGKLRGRRHKQRRGPLVIYNPDEDGKEL 199
Query: 188 TRAFRNIPG 214
+AFRNIPG
Sbjct: 200 VKAFRNIPG 208
Score = 50.8 bits (116), Expect = 8e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
HLGRF++WT SAFG LD ++GS PS KK+F L
Sbjct: 227 HLGRFIVWTSSAFGALDTIYGSTTEPSALKKDFLL 261
>UniRef50_Q95YH2 Cluster: Ribosomal protein L4; n=1; Paramecium
caudatum|Rep: Ribosomal protein L4 - Paramecium caudatum
Length = 252
Score = 65.3 bits (152), Expect = 3e-10
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKD 178
DK++ TK A+ FL+R A+ D+ V ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 3 DKIESYEKTKDALNFLKRFGAFEDVQKVVSTKTIRAGVSKSRGKKYRVRKGPLVVYFNEN 62
Query: 179 QGLTRAFRNIPG 214
L +AFRN+PG
Sbjct: 63 AKLLKAFRNVPG 74
Score = 44.8 bits (101), Expect = 5e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 271 LGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
LGRFVIWTQSAF LD LFG+++ S K + L
Sbjct: 94 LGRFVIWTQSAFANLDKLFGTYRYSSILKDGYQL 127
>UniRef50_A7R5H8 Cluster: Chromosome undetermined scaffold_974,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_974, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 386
Score = 64.1 bits (149), Expect = 8e-10
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D + + T A+ L++ A+ D S + GKGKMRNRR I RKGPLI++ +
Sbjct: 19 DSAESVEKTSAAIDILKQFDAYLDTEKAKDSHAIHPGKGKMRNRRYISRKGPLIVYGMEG 78
Query: 182 G-LTRAFRNIPG 214
L +AFRNIPG
Sbjct: 79 AKLVKAFRNIPG 90
Score = 38.7 bits (86), Expect = 0.033
Identities = 14/31 (45%), Positives = 25/31 (80%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 360
HLGRFVIWT+S+F +LD ++ S++ ++++
Sbjct: 109 HLGRFVIWTKSSFEKLDSIYRSFEKKLRRRR 139
>UniRef50_Q7R0P2 Cluster: GLP_79_45017_44067; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_79_45017_44067 - Giardia lamblia
ATCC 50803
Length = 316
Score = 64.1 bits (149), Expect = 8e-10
Identities = 29/66 (43%), Positives = 43/66 (65%)
Frame = +2
Query: 17 INXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRA 196
+ TK A+ ++ + D+ S+ +RAG+GKMRNRR I RKGPL+I+N + + R
Sbjct: 149 VTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTED-VARG 207
Query: 197 FRNIPG 214
FRN+PG
Sbjct: 208 FRNLPG 213
>UniRef50_Q4XUM2 Cluster: 60S ribosomal subunit protein L4/L1,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L4/L1, putative - Plasmodium chabaudi
Length = 411
Score = 63.7 bits (148), Expect = 1e-09
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +2
Query: 8 VQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 187
++ + TK A+ FL L ++ + KS +LRA GKMRNR+ GPLII++ D G+
Sbjct: 158 IESMQKTKDALKFLISLGLRDEVNRLIKSXKLRARXGKMRNRKYKISNGPLIIYSXDSGI 217
Query: 188 TRAFRNIPG 214
+AFRNIPG
Sbjct: 218 KKAFRNIPG 226
Score = 31.1 bits (67), Expect = 6.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 271 LGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
+GR IW++ AF +LD ++G KKN+ L
Sbjct: 246 IGRLCIWSEDAFKKLDVIYGKTFQKYVTKKNYIL 279
>UniRef50_UPI00005A24EF Cluster: PREDICTED: similar to ribosomal
protein L4; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to ribosomal protein L4 - Canis familiaris
Length = 253
Score = 62.1 bits (144), Expect = 3e-09
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRN 130
DKV+ T++AV+ L++LKAW+DI VY SQR+RAGKGKMRN
Sbjct: 19 DKVEGYKKTEEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRN 61
>UniRef50_Q3SEA6 Cluster: Ribosomal protein L4, putative; n=2;
Oligohymenophorea|Rep: Ribosomal protein L4, putative -
Paramecium tetraurelia
Length = 406
Score = 61.7 bits (143), Expect = 4e-09
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKD 178
DK++ T A+ FL+R A+ D+ V ++ +RAG K R ++ RKGPL++ FN++
Sbjct: 157 DKIESYEKTTDALNFLKRFGAFEDVQKVVSTKVVRAGISKQRGKKYRVRKGPLVVYFNEN 216
Query: 179 QGLTRAFRNIPG 214
L +AFRN+PG
Sbjct: 217 AKLLKAFRNVPG 228
Score = 45.2 bits (102), Expect = 4e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +1
Query: 271 LGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
LGRFVIWTQSAF LD LFG+++ S K + L
Sbjct: 248 LGRFVIWTQSAFAHLDKLFGTYRYASVLKDGYQL 281
>UniRef50_A3FPV6 Cluster: 60S ribosomal protein-like, putative; n=4;
Cryptosporidium|Rep: 60S ribosomal protein-like,
putative - Cryptosporidium parvum Iowa II
Length = 394
Score = 60.9 bits (141), Expect = 7e-09
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAW--SDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK 175
+++Q IN T AV F + ++ + S +R GKGKMRNRRR+ GPL+++ +
Sbjct: 157 NEIQNINKTSTAVEFFKNFGKGLEEEMKRIESSIAIRCGKGKMRNRRRVCAVGPLVVYAE 216
Query: 176 DQGLTRAFRNIPG 214
D G+ +A RNI G
Sbjct: 217 DNGIVKAMRNIKG 229
>UniRef50_A7E7X3 Cluster: 60S ribosomal protein L4; n=2;
Sclerotiniaceae|Rep: 60S ribosomal protein L4 -
Sclerotinia sclerotiorum 1980
Length = 373
Score = 60.1 bits (139), Expect = 1e-08
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Frame = +2
Query: 14 EINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN---KDQG 184
+I T A L+ + A D+ V S++LRAGKGK+R RR QR+GPL++++ +
Sbjct: 162 KIARTAAAAGLLKTVGALKDVEKVKDSRKLRAGKGKLRGRRHRQRRGPLVVYDGATDGKE 221
Query: 185 LTRAFRNIPG 214
L RAFRN+PG
Sbjct: 222 LVRAFRNLPG 231
Score = 45.2 bits (102), Expect = 4e-04
Identities = 19/35 (54%), Positives = 25/35 (71%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
HLGRF+IW+ SAF LD ++G+ PS KK+F L
Sbjct: 250 HLGRFIIWSSSAFKALDNIYGTTTAPSALKKDFLL 284
>UniRef50_O28355 Cluster: 50S ribosomal protein L4P; n=9;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Archaeoglobus fulgidus
Length = 252
Score = 58.8 bits (136), Expect = 3e-08
Identities = 23/71 (32%), Positives = 44/71 (61%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
++++ + TK R + ++D+ + +R RAG+GKMR RR +++K L++ KD
Sbjct: 143 NELESVKRTKDVAEVFRAIGVYADVERAKERKRYRAGRGKMRGRRYVKKKSVLLVVGKDD 202
Query: 182 GLTRAFRNIPG 214
G+ +A +N+PG
Sbjct: 203 GVVKAAKNLPG 213
>UniRef50_Q8SRC2 Cluster: 60S RIBOSOMAL PROTEIN L4; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L4 -
Encephalitozoon cuniculi
Length = 335
Score = 58.4 bits (135), Expect = 4e-08
Identities = 32/71 (45%), Positives = 41/71 (57%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D + + TK AV LR L ++ V KS+ +R GKGKMRNRR QRKG LI+ +
Sbjct: 153 DDIAKARKTKDAVEILRNLNMTEELKRVEKSRGVRCGKGKMRNRRYTQRKGILIVHGESS 212
Query: 182 GLTRAFRNIPG 214
+ FRNI G
Sbjct: 213 EML-GFRNIRG 222
Score = 35.1 bits (77), Expect = 0.41
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 274 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
GR +IWT+SAF +LD +FG + ++ F L
Sbjct: 243 GRLIIWTESAFEKLDKIFGGVEREAELTPGFKL 275
>UniRef50_Q8TY91 Cluster: 50S ribosomal protein L4P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanopyrus kandleri
Length = 260
Score = 58.4 bits (135), Expect = 4e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D+++ +N ++ F + + W+D+ ++R+RAGKGK R RR ++ K LI+ ++D+
Sbjct: 150 DELKSLNKAREVREFFKSVGLWADVERAKSNRRIRAGKGKRRGRRYVKPKSVLIVVDEDE 209
Query: 182 GLTRAFRNIPG 214
G+ RN PG
Sbjct: 210 GIKLGARNHPG 220
>UniRef50_Q9HIR0 Cluster: 50S ribosomal protein L4P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L4P -
Thermoplasma acidophilum
Length = 255
Score = 56.8 bits (131), Expect = 1e-07
Identities = 29/71 (40%), Positives = 42/71 (59%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D V+ IN TK A+ L+ L + DI + + +RAG+GKMR RR Q K LI+
Sbjct: 147 DGVEGINKTKDAIALLKNLGVYEDIERSREGKHIRAGRGKMRGRRYKQPKSVLIVARNSS 206
Query: 182 GLTRAFRNIPG 214
+ +AFR++PG
Sbjct: 207 AM-KAFRSLPG 216
>UniRef50_P60847 Cluster: 50S ribosomal protein L4P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L4P -
Nanoarchaeum equitans
Length = 268
Score = 53.2 bits (122), Expect = 1e-06
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-D 178
D ++++ TK+ L +L ++ VY+ +R RAGKGK R R I+RKGPLI+ N +
Sbjct: 157 DGLEQLRKTKEIQQLLLKLGLEKELERVYEIKR-RAGKGKRRGRAYIERKGPLIVVNDYN 215
Query: 179 QGLTRAFRNIPG 214
+ L +A NIPG
Sbjct: 216 EQLFKAVDNIPG 227
>UniRef50_Q2NFV7 Cluster: 50S ribosomal protein L4P; n=2;
Euryarchaeota|Rep: 50S ribosomal protein L4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 259
Score = 52.4 bits (120), Expect = 3e-06
Identities = 22/71 (30%), Positives = 41/71 (57%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D+++ + TK+ + L DI+ K +++++GKGK+R R+ KGPL++ D+
Sbjct: 146 DEIETVKTTKETREIFKDLGIMDDIVRAKKGRKIKSGKGKLRGRKYRTPKGPLVVVGNDR 205
Query: 182 GLTRAFRNIPG 214
G++ RN G
Sbjct: 206 GISLGARNHAG 216
>UniRef50_Q9UXA6 Cluster: 50S ribosomal protein L4P; n=3;
Archaea|Rep: 50S ribosomal protein L4P - Sulfolobus
solfataricus
Length = 267
Score = 49.2 bits (112), Expect = 2e-05
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLII-FNKD 178
D + + T + FL+++ + D+ V + R+RAGKGKMR R+ + GPLII + +
Sbjct: 152 DDIVNLKTTSEVEEFLKKIGVYDDVERVKERIRIRAGKGKMRGRKYKEPIGPLIIVHDSN 211
Query: 179 QGLTRAFRNIPG 214
+ +A RN+ G
Sbjct: 212 SPIIKAARNLAG 223
>UniRef50_Q8ZW51 Cluster: 50S ribosomal protein L4P; n=9;
Archaea|Rep: 50S ribosomal protein L4P - Pyrobaculum
aerophilum
Length = 283
Score = 47.6 bits (108), Expect = 7e-05
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +2
Query: 11 QEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNK-DQGL 187
++IN K+A L W D+ + ++RAGKGKMR RR + K L++ + + L
Sbjct: 176 EKINRAKEAKKLFEALGLWPDVERAAEGVKIRAGKGKMRGRRYKEPKSVLVVVSDLNAPL 235
Query: 188 TRAFRNIPG 214
A RN PG
Sbjct: 236 IAAVRNFPG 244
>UniRef50_Q673S8 Cluster: Ribosomal protein L4; n=3; cellular
organisms|Rep: Ribosomal protein L4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 304
Score = 43.6 bits (98), Expect = 0.001
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +2
Query: 26 TKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRN 205
T++ V + L +D+ + +RAGKG MR R+ K L++ ++ GL +A RN
Sbjct: 207 TRKFVAMMEGLGLGADLDRARTGRTIRAGKGTMRGRKYRTPKSILLVVSQTNGLAKAARN 266
Query: 206 IPG 214
IPG
Sbjct: 267 IPG 269
>UniRef50_Q98S44 Cluster: 60s ribosomal protein L1; n=2;
Cryptomonadaceae|Rep: 60s ribosomal protein L1 -
Guillardia theta (Cryptomonas phi)
Length = 255
Score = 41.9 bits (94), Expect = 0.004
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
D +++I T+ + L L S + K ++L++GKGKMRNRR + GPL++F +
Sbjct: 151 DSIEKIPKTRDLIKILTTLGINSIVRNKLK-RKLKSGKGKMRNRRFKKPTGPLLVFKNNL 209
Query: 182 GLTRAFRNI 208
R NI
Sbjct: 210 KSLRNIANI 218
>UniRef50_Q9YFM1 Cluster: 50S ribosomal protein L4P; n=8;
Archaea|Rep: 50S ribosomal protein L4P - Aeropyrum
pernix
Length = 272
Score = 37.9 bits (84), Expect = 0.058
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +2
Query: 14 EINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQG-LT 190
+I+ ++A L + + D+L + +R AGKGKMR RR K L + + L
Sbjct: 162 KISTAREARSLLESVGVYEDVLRAKEGKRYNAGKGKMRGRRYKVPKSVLFVLEDPRSPLA 221
Query: 191 RAFRNIPG 214
A + +PG
Sbjct: 222 LAVKGMPG 229
>UniRef50_A7AUF0 Cluster: Ribosomal protein RPL4A; n=1; Babesia
bovis|Rep: Ribosomal protein RPL4A - Babesia bovis
Length = 360
Score = 37.1 bits (82), Expect = 0.10
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD- 178
D +++IN TK AV L + +++ +R+ G+ R+ R+ + GPLII
Sbjct: 155 DAIEQINKTKDAVKLLETIGLGAEL------KRIDKVTGRARDGRKKRPVGPLIILRATA 208
Query: 179 -QGLTRAFRNIPG 214
+G RAFRNIPG
Sbjct: 209 VEG-KRAFRNIPG 220
>UniRef50_UPI0000F1F89E Cluster: PREDICTED: similar to KIAA2022
protein; n=2; Danio rerio|Rep: PREDICTED: similar to
KIAA2022 protein - Danio rerio
Length = 1230
Score = 31.9 bits (69), Expect = 3.8
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -3
Query: 247 EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTL---DTTTVAHFTLTSTKTLRLVHGK 77
+ QL + Q+ T DVAESA Q ++G + L ++ TV+ F+ S ++ R+++ K
Sbjct: 716 QAQLHSNQQFTTADVAESAIQP----NSFDGEMALPMSESLTVSGFSQLSLESNRMLYEK 771
Query: 76 DIRPCLEAPQEDDSLF 29
+ P E P D+ F
Sbjct: 772 NYMP--EQPLPPDAEF 785
>UniRef50_A1IE46 Cluster: ABC-type transport system involved in
resistance to organic solvents periplasmic
component-like; n=1; Candidatus Desulfococcus oleovorans
Hxd3|Rep: ABC-type transport system involved in
resistance to organic solvents periplasmic
component-like - Candidatus Desulfococcus oleovorans
Hxd3
Length = 305
Score = 31.9 bits (69), Expect = 3.8
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = -3
Query: 280 NVQDDLPEPLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTT-TVAHFTLTST 104
N+Q++ Q+ + + + + + TL ++EDY+ +T DTT TV T
Sbjct: 52 NLQENADVKFQKASIGKVSRIDLTE--DKVRVTLKILEDYQSRITRDTTVTVKSPTFIGD 109
Query: 103 KTLRLVHGKDIRPCLEAPQEDDSL 32
+ + ++ G P ++ +E S+
Sbjct: 110 EYVAVIPGNSRAPAMDEGEEIQSI 133
>UniRef50_Q9ULG1 Cluster: Putative DNA helicase INO80 complex homolog
1; n=27; Euteleostomi|Rep: Putative DNA helicase INO80
complex homolog 1 - Homo sapiens (Human)
Length = 1556
Score = 31.9 bits (69), Expect = 3.8
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 280 NVQDDLPEPLQEVQLVNIQELHTGDVA--ESASQTLILVEDYEGSLTLDTTTVAHFTLTS 107
+V +P P E+ + + ELHTG + ES+S L++V+D S T + ++T
Sbjct: 1348 SVDSAMPSPFSEISISS--ELHTGSIPLDESSSDMLVIVDDPASSAPQSRATNSPASITG 1405
Query: 106 T 104
+
Sbjct: 1406 S 1406
>UniRef50_UPI000069DD10 Cluster: Mastermind-like protein 3 (Mam-3).;
n=3; Tetrapoda|Rep: Mastermind-like protein 3 (Mam-3). -
Xenopus tropicalis
Length = 1046
Score = 31.5 bits (68), Expect = 5.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 269 ILDVSSSGLSPHSAGLTPYSGHGRHHQNKRRTST 370
+L + GL S G P S HG+H N R ST
Sbjct: 574 LLIMKQKGLMNQSMGYPPLSAHGQHENNNYRMST 607
>UniRef50_Q0VPC9 Cluster: ATP-dependent helicase HrpA; n=1;
Alcanivorax borkumensis SK2|Rep: ATP-dependent helicase
HrpA - Alcanivorax borkumensis (strain SK2 / ATCC 700651
/ DSM 11573)
Length = 1316
Score = 30.7 bits (66), Expect = 8.8
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 280 NVQDDLPEPLQEVQLVNIQELHTGDVAESASQTL 179
+V DLP+P QE V QE GD+ ES Q L
Sbjct: 1019 SVTRDLPKPKQETPAVRGQEWLFGDIPESQEQDL 1052
>UniRef50_Q8KFS9 Cluster: tRNA pseudouridine synthase B; n=10;
Chlorobiaceae|Rep: tRNA pseudouridine synthase B -
Chlorobium tepidum
Length = 240
Score = 30.7 bits (66), Expect = 8.8
Identities = 20/56 (35%), Positives = 28/56 (50%)
Frame = -3
Query: 220 LHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHGKDIRPCLEA 53
L TG ++ S +L + YEG++ L TV+H T + LR V D R EA
Sbjct: 63 LATGRKTKTISSLELLDKAYEGTIRLGAKTVSHDTESEEYDLRDVPSLDERAIREA 118
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,011,191
Number of Sequences: 1657284
Number of extensions: 4862836
Number of successful extensions: 13610
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 13165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13594
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 13594373344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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