Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0316
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   1.8  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   4.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   4.1  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   7.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    20   7.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    20   9.4  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    20   9.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 299 PHSAGLTPYSGHGRHHQN 352
           P S G++PY+    HH +
Sbjct: 40  PLSLGMSPYASSQHHHHH 57


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 35  PVWXC*SPGLC 3
           PVW   +PG+C
Sbjct: 619 PVWCAQNPGMC 629


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 149 YAGYDDGCAFYPYQHEDAETCTRXGY 72
           +AGY +G   +  Q+ +A  CT   Y
Sbjct: 33  WAGYRNGEGSFKPQNINANLCTHVHY 58


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -2

Query: 365 KFFFCFDGVFHDPN 324
           +F++C+D  F+  N
Sbjct: 250 QFYYCYDSGFNSDN 263


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 347 DGVFHDPNKGSSLPNAD*VQMT 282
           D +  DP + S L  AD ++MT
Sbjct: 63  DAMKKDPARHSKLEKADILEMT 84


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 365 KFFFCFDGVFH 333
           KF++C DG ++
Sbjct: 124 KFYYCVDGKYN 134


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 316 DPLFGSWKTPSKQKKNFNL 372
           +PL+ S + P K ++ +N+
Sbjct: 16  EPLYSSTQMPEKVREKWNV 34


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 316 DPLFGSWKTPSKQKKNFNL 372
           +PL+ S + P K ++ +N+
Sbjct: 16  EPLYSSTQMPEKVREKWNV 34


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 304 FGRLDPLFGSWKTPSKQKKNF 366
           F  L  L+ +W   SKQ + F
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYF 163


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 304 FGRLDPLFGSWKTPSKQKKNF 366
           F  L  L+ +W   SKQ + F
Sbjct: 143 FDTLGGLYSTWSKKSKQVEYF 163


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,750
Number of Sequences: 336
Number of extensions: 1155
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)