BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--0316 (372 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 97 8e-22 SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 97 1e-21 SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 2.2 SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.8 SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc... 24 6.7 >SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 97.1 bits (231), Expect = 8e-22 Identities = 40/71 (56%), Positives = 56/71 (78%) Frame = +2 Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181 D VQ TK+AV L+ +KA+ D++ V S++LRAGKGK+RNRR +QR+GPL++FN+D Sbjct: 156 DAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDT 215 Query: 182 GLTRAFRNIPG 214 G+ +AFRNIPG Sbjct: 216 GIVKAFRNIPG 226 Score = 49.2 bits (112), Expect = 2e-07 Identities = 22/35 (62%), Positives = 27/35 (77%) Frame = +1 Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372 HLGRFVIWT+SAFG LD +FGS ++ KKN+ L Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFL 279 >SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 96.7 bits (230), Expect = 1e-21 Identities = 40/71 (56%), Positives = 56/71 (78%) Frame = +2 Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181 D VQ TK+AV L+ +KA+ D++ V S++LRAGKGK+RNRR +QR+GPL++FN+D Sbjct: 156 DAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDA 215 Query: 182 GLTRAFRNIPG 214 G+ +AFRNIPG Sbjct: 216 GIVKAFRNIPG 226 Score = 49.6 bits (113), Expect = 2e-07 Identities = 22/35 (62%), Positives = 27/35 (77%) Frame = +1 Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372 HLGRFVIWT+SAFG LD +FGS ++ KKN+ L Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFL 279 >SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 509 Score = 25.8 bits (54), Expect = 2.2 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = -3 Query: 259 EP-LQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLV- 86 EP L V++V E+ DVA S + + + +GSL V +F + ST+ L+L Sbjct: 151 EPNLNNVKIVQAHEMEVRDVAFSPNDSKFVTASDDGSL-----KVWNFHM-STEELKLTG 204 Query: 85 HGKDIR 68 HG D++ Sbjct: 205 HGWDVK 210 >SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 497 Score = 25.0 bits (52), Expect = 3.8 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 278 VSSSGLSPHSAGLTPYSGHGRHHQNK 355 VS S HS P+S GRH++ K Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145 >SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 452 Score = 24.2 bits (50), Expect = 6.7 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = +2 Query: 158 LIIFNKDQGLTRAFRNIP 211 +++F+K +G+T FRN P Sbjct: 134 VLVFSKQKGITVVFRNDP 151 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,302,266 Number of Sequences: 5004 Number of extensions: 18886 Number of successful extensions: 49 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 49 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 118158644 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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