Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0316
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    97   8e-22
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    97   1e-21
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   2.2  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   3.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   6.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 97.1 bits (231), Expect = 8e-22
 Identities = 40/71 (56%), Positives = 56/71 (78%)
 Frame = +2

Query: 2   DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
           D VQ    TK+AV  L+ +KA+ D++ V  S++LRAGKGK+RNRR +QR+GPL++FN+D 
Sbjct: 156 DAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDT 215

Query: 182 GLTRAFRNIPG 214
           G+ +AFRNIPG
Sbjct: 216 GIVKAFRNIPG 226



 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +1

Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
           HLGRFVIWT+SAFG LD +FGS    ++ KKN+ L
Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFL 279


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 40/71 (56%), Positives = 56/71 (78%)
 Frame = +2

Query: 2   DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
           D VQ    TK+AV  L+ +KA+ D++ V  S++LRAGKGK+RNRR +QR+GPL++FN+D 
Sbjct: 156 DAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDA 215

Query: 182 GLTRAFRNIPG 214
           G+ +AFRNIPG
Sbjct: 216 GIVKAFRNIPG 226



 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +1

Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
           HLGRFVIWT+SAFG LD +FGS    ++ KKN+ L
Sbjct: 245 HLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFL 279


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = -3

Query: 259 EP-LQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLV- 86
           EP L  V++V   E+   DVA S + +  +    +GSL      V +F + ST+ L+L  
Sbjct: 151 EPNLNNVKIVQAHEMEVRDVAFSPNDSKFVTASDDGSL-----KVWNFHM-STEELKLTG 204

Query: 85  HGKDIR 68
           HG D++
Sbjct: 205 HGWDVK 210


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 278 VSSSGLSPHSAGLTPYSGHGRHHQNK 355
           VS S    HS    P+S  GRH++ K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 158 LIIFNKDQGLTRAFRNIP 211
           +++F+K +G+T  FRN P
Sbjct: 134 VLVFSKQKGITVVFRNDP 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,266
Number of Sequences: 5004
Number of extensions: 18886
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)