Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0316
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 69 1e-12
07_01_0578 + 4295386-4296489,4297394-4297507 67 4e-12
03_03_0125 - 14630078-14630136,14630197-14631160 28 2.7
03_03_0122 - 14617879-14618871 28 2.7
02_02_0527 - 11191601-11192872 28 2.7
02_04_0073 - 19471254-19472681 27 3.6
11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067 27 4.7
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 27 4.7
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454... 27 6.2
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266... 27 6.2
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 26 8.2
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 68.9 bits (161), Expect = 1e-12
Identities = 32/72 (44%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD- 178
D ++ I T Q++ L+++ A++D S +RAGKGKMRNRR I RKGPLI++ +
Sbjct: 159 DSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYGTEG 218
Query: 179 QGLTRAFRNIPG 214
+ +AFRN+PG
Sbjct: 219 SKVVKAFRNLPG 230
Score = 49.2 bits (112), Expect = 1e-06
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
HLGRFVIWT+ AF +LD ++G + TP+ +KK F L
Sbjct: 249 HLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVL 283
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 67.3 bits (157), Expect = 4e-12
Identities = 32/72 (44%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD- 178
D + I T QA+ L+++ A++D S +R GKGKMRNRR I RKGPLI++ +
Sbjct: 160 DSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEG 219
Query: 179 QGLTRAFRNIPG 214
+ +AFRN+PG
Sbjct: 220 SKIVKAFRNLPG 231
Score = 50.0 bits (114), Expect = 6e-07
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
HLGRFVIWT+SAF +L+ ++G+++ PS +KK F L
Sbjct: 250 HLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFIL 284
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 274 GRFVIWTQSAFGRL-DPLFGSWK 339
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 274 GRFVIWTQSAFGRL-DPLFGSWK 339
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>02_02_0527 - 11191601-11192872
Length = 423
Score = 27.9 bits (59), Expect = 2.7
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = -3
Query: 277 VQDDLPEPLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTL---DTTTVAHFTLTS 107
V+DD PE Q V + + AE + LI VE ++ + L D + A + L +
Sbjct: 282 VRDDCPESFQ--LSVKLSQ------AEKSGLYLIHVEGFKIHVWLHGTDGNSSADWNLVN 333
Query: 106 TKTLRLVHGKDIRPCLEAPQEDDSLFGXVDLLDFV 2
T LR V G ++P E+ SL G D +FV
Sbjct: 334 TICLREVFGHLVKPSWESGDSRISLPGSGDNAEFV 368
>02_04_0073 - 19471254-19472681
Length = 475
Score = 27.5 bits (58), Expect = 3.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 296 SPHSAGLTPYSGHGRHHQNKR 358
+P G +P S HG HH++++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>11_01_0388 + 2933006-2934173,2934312-2934371,2934877-2935067
Length = 472
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = -3
Query: 169 EDYEGSLTL--DTTTVAHFTLTSTKTLRLVHGKDIRPCLEAPQEDD 38
ED +GS+ + DTT++ + +L++ ++L LV K ++P L E+D
Sbjct: 236 EDCKGSVIVSCDTTSMYYKSLSTLQSLLLVCVKKLQPKLVVTIEED 281
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 27.1 bits (57), Expect = 4.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 274 GRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
GR+V+ SA LDP F SW S++ K F++
Sbjct: 678 GRYVV-AASAGNALDPGFCSWDYYSREAKAFHI 709
>02_03_0012 -
13940583-13940853,13942281-13942509,13945275-13945476,
13945961-13946278,13947321-13947419
Length = 372
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 316 QACRMRTESR*RNVQDDLPEPLQEVQLVNIQELHTGDVAESAS 188
+A R R + + N+ DD+ E ++ L + E HTG A S
Sbjct: 278 EAARARYQKKVSNIIDDVLEWSPKLALSGMMEKHTGTNASETS 320
>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
2668344-2668410,2668473-2668562,2668672-2668787,
2668999-2671924
Length = 1170
Score = 26.6 bits (56), Expect = 6.2
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = -3
Query: 268 DLPEPLQEVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRL 89
D P Q L++++ LH D + + L+ED + ++ + T V + +T+ L
Sbjct: 931 DCPALDQAENLISLKRLHMVDCQNAKQFRMCLLEDQQLAVDVVTVVVESRVARAKETVVL 990
Query: 88 VHGKDIR 68
V+ K R
Sbjct: 991 VYLKCYR 997
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 296 SPHSAGLTPYSGHGRHHQNKR 358
S S G++ Y G RHHQN R
Sbjct: 758 SGFSRGVSKYRGVARHHQNGR 778
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,118
Number of Sequences: 37544
Number of extensions: 141276
Number of successful extensions: 389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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