Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0316
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                86   7e-18
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)                   26   8.5  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 86.2 bits (204), Expect = 7e-18
 Identities = 37/71 (52%), Positives = 51/71 (71%)
 Frame = +2

Query: 2   DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
           D ++ +  T  AV  L+ + A+ D+     S+++RAGKGKMRNRR + RKGPLII+N DQ
Sbjct: 153 DAIESVTKTSAAVKLLKAVNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQ 212

Query: 182 GLTRAFRNIPG 214
           GL +AFRN+PG
Sbjct: 213 GLRQAFRNLPG 223


>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 187 QTLILVEDYEGSLTLDTTTVAHFTLTSTKTL 95
           Q LIL+  Y   + L+T+++  F+L S KT+
Sbjct: 235 QELILIPYYTEKVALETSSLIEFSLLSAKTI 265


>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = -3

Query: 265 LPEPLQEVQLVNIQELHTGDVAESASQTLILVEDY--EGSLTLDTTTVAHFTLTSTKTLR 92
           L E L  V+ + + +  T D   +   TL L +    + +LTLD T     TLT   TL 
Sbjct: 55  LDETLTLVETLTLDDTLTLDDTLTLDDTLTLDDTLTLDDTLTLDDTLTLDDTLTLDNTLT 114

Query: 91  LV 86
           LV
Sbjct: 115 LV 116


>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
          Length = 560

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 98  RLRAGKGKMRNRRRIQRKGPLIIFNKDQGL 187
           R RAGK K+R  +R+    P+  FN  + +
Sbjct: 497 RCRAGKNKLRQAKRLNVPNPVKDFNMAENI 526


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 95   QRLRAGKGKMRNR--RRIQRKGPLIIFNKDQG 184
            Q+L A KGK ++R  R +QR+  L + N+D G
Sbjct: 1147 QKLDASKGKQQSRENRAMQRRLQLAVCNEDFG 1178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,910
Number of Sequences: 59808
Number of extensions: 155942
Number of successful extensions: 551
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)