Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--0316
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 90 5e-19
AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical ... 29 1.4
U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin... 27 4.3
U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin... 27 4.3
U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6... 27 4.3
AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threon... 27 4.3
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 26 7.5
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 26 7.5
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 26 7.5
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 26 7.5
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 89.8 bits (213), Expect = 5e-19
Identities = 40/71 (56%), Positives = 52/71 (73%)
Frame = +2
Query: 2 DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
DKV+ TK+AV+FLRR W+DI VY S+R RAGKGK+RNR+ Q+ GP++I+ +D
Sbjct: 155 DKVESFRKTKEAVVFLRRSHLWADIEKVYNSKRNRAGKGKLRNRQHKQKLGPVVIYGQDA 214
Query: 182 GLTRAFRNIPG 214
RAFRNIPG
Sbjct: 215 ECARAFRNIPG 225
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKK 360
HLGR +IWT+SAF +LD ++G+ S Q K
Sbjct: 244 HLGRLIIWTESAFKKLDTIYGTTVANSSQLK 274
>AF016679-4|AAB66158.1| 430|Caenorhabditis elegans Hypothetical
protein T28C12.3 protein.
Length = 430
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 271 DDLPEPLQEVQLVNIQELHTG--DVAESASQTLILVEDYEGSLTLDTTTVAHFTL 113
D + L+ + ++ LH + E + + L++++ +E + TL TTVA+F+L
Sbjct: 277 DQVVSLLKHFEPETLESLHIEILEFDEDSVKELVILDQWEEAKTLSLTTVAYFSL 331
>U56966-4|AAA98719.2| 906|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
a protein.
Length = 906
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 262 PEPLQEVQLVNIQELHTGDVAESASQT 182
PEP ++ NI+ GDVAE+A+ T
Sbjct: 89 PEPEPAIKFDNIESEDYGDVAETAAST 115
>U56966-3|AAU05584.1| 332|Caenorhabditis elegans Ace(angiotensin
converting enzyme)-like non-peptidase protein 1, isoform
b protein.
Length = 332
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 262 PEPLQEVQLVNIQELHTGDVAESASQT 182
PEP ++ NI+ GDVAE+A+ T
Sbjct: 89 PEPEPAIKFDNIESEDYGDVAETAAST 115
>U23511-3|AAC46790.1| 636|Caenorhabditis elegans Small protein 6
protein.
Length = 636
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 232 NIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVH 83
NI + D+ +E S T ++L+ DY +L TLT+ + LRL+H
Sbjct: 318 NILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREETLTTDEALRLIH 369
>AF104017-1|AAD12261.1| 636|Caenorhabditis elegans serine-threonine
kinase SMA-6 protein.
Length = 636
Score = 27.1 bits (57), Expect = 4.3
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3
Query: 232 NIQELHTGDV-AESASQT-LILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVH 83
NI + D+ +E S T ++L+ DY +L TLT+ + LRL+H
Sbjct: 318 NILQFVAADIWSEEDSMTKMLLITDYHELGSLSDYLCREETLTTDEALRLIH 369
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 62 AWSDILXVYKSQRLRAGKGKMRNRR 136
A SDIL Y+S +A KG++ N+R
Sbjct: 1185 AISDILDKYRSAEEKANKGELDNQR 1209
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 62 AWSDILXVYKSQRLRAGKGKMRNRR 136
A SDIL Y+S +A KG++ N+R
Sbjct: 1185 AISDILDKYRSAEEKANKGELDNQR 1209
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 62 AWSDILXVYKSQRLRAGKGKMRNRR 136
A SDIL Y+S +A KG++ N+R
Sbjct: 945 AISDILDKYRSAEEKANKGELDNQR 969
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 62 AWSDILXVYKSQRLRAGKGKMRNRR 136
A SDIL Y+S +A KG++ N+R
Sbjct: 1185 AISDILDKYRSAEEKANKGELDNQR 1209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,331,792
Number of Sequences: 27780
Number of extensions: 112131
Number of successful extensions: 309
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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