Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0316
         (372 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    64   2e-11
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    63   5e-11
At2g47550.1 68415.m05934 pectinesterase family protein contains ...    28   1.7  
At4g19515.1 68417.m02871 disease resistance family protein simil...    28   2.3  
At5g46540.1 68418.m05730 ABC transporter family protein contains...    27   4.0  
At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1) domain...    26   7.0  
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai...    26   9.2  
At2g33990.1 68415.m04162 calmodulin-binding family protein simil...    26   9.2  
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain...    26   9.2  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQ 181
           D  + +  T  A+  L+++ A+ D      S  +R GKGKMRNRR I RKGPL++F  + 
Sbjct: 162 DSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEG 221

Query: 182 G-LTRAFRNIPG 214
             + +AFRN+PG
Sbjct: 222 AKIVKAFRNLPG 233



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 20/35 (57%), Positives = 30/35 (85%)
 Frame = +1

Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
           HLGRFVIWT+SAF +L+ ++GS++ PS++KK + L
Sbjct: 252 HLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 286


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = +2

Query: 2   DKVQEINXTKQAVIFLRRLKAWSDILXVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKD- 178
           D  + +  T  A+  L+++ A+ D      S  +R GKGKMRNRR I RKGPL+++  + 
Sbjct: 161 DSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEG 220

Query: 179 QGLTRAFRNIPG 214
             + +AFRN+PG
Sbjct: 221 SKIVKAFRNLPG 232



 Score = 50.8 bits (116), Expect = 3e-07
 Identities = 20/35 (57%), Positives = 30/35 (85%)
 Frame = +1

Query: 268 HLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNL 372
           HLGRFVIWT+SAF +L+ ++GS++ PS++KK + L
Sbjct: 251 HLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVL 285


>At2g47550.1 68415.m05934 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 560

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -3

Query: 244 VQLVNIQELHTGDVAESASQTLILVED--YEGSLTLDTTTVAHFTLTSTKTLRLVHGKDI 71
           + +++ +    G VA  A  T+  +ED  +  SLT+D    +  T  STKTL L   +D+
Sbjct: 78  ISMIDAELDRKGKVA--AKSTVGALEDCKFLASLTMDYLLSSSQTADSTKTLSLSRAEDV 135

Query: 70  RPCLEA 53
              L A
Sbjct: 136 HTFLSA 141


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -3

Query: 247 EVQLVNIQELHTGDVAESASQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHGK 77
           E+  VN QE+H GD        + ++ D  GS + +T T      +S  +L+L+ GK
Sbjct: 101 EIFPVNKQEMHVGDSCTITKCGVYVINDAAGSSSGNTMTP---QCSSMDSLKLLDGK 154


>At5g46540.1 68418.m05730 ABC transporter family protein contains
           Pfam profile: PF00005 ABC transporter; similar to
           multidrug-resistant protein CjMDR1 GI:14715462 from
           [Coptis japonica]
          Length = 1248

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 190 SQTLILVEDYEGSLTLDTTTVAHFTLTSTKTLRLVHGKDI 71
           S TL       G ++LD T   H  ++STKT  +  GK++
Sbjct: 628 SGTLTSPSGLPGVISLDQTEEFHENISSTKTQTVKKGKEV 667


>At4g32070.1 68417.m04564 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein similar to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 811

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 112 TSTKTLRLVHGKDIR 68
           T T+T++LVHG DIR
Sbjct: 315 TVTRTIKLVHGDDIR 329


>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
           domain-containing protein similar to SNM1 protein [Mus
           musculus] GI:7595835; contains Pfam profile PF00536: SAM
           domain (Sterile alpha motif)
          Length = 723

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 220 LHTGDVAESASQTLILVEDYEGSLTLDTT 134
           LHTGD   S   +  L+  +  SL LDTT
Sbjct: 502 LHTGDFRYSEEMSNWLIGSHISSLILDTT 530


>At2g33990.1 68415.m04162 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 249

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 32  QAVIFLRRLKAWSDILXVYKSQRL-RAGKGKMRNRR 136
           QAV+ LR L +WS I    K++R+    + +++N+R
Sbjct: 87  QAVVTLRYLHSWSKIQSEIKARRVCMVTEWRLKNKR 122


>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein low similarity to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 697

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 112 TSTKTLRLVHGKDIR 68
           T T+T++LVHG DIR
Sbjct: 278 TVTRTVKLVHGDDIR 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,048,245
Number of Sequences: 28952
Number of extensions: 106742
Number of successful extensions: 317
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)